Structural Classification of Proteins
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Family: DnaQ-like 3'-5' exonuclease

contains Pfam 00929

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Ribonuclease H-like motif [53066]
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. Superfamily: Ribonuclease H-like [53098]
    consists of one domain of this fold
    link to SUPERFAMILY database - Superfamily
  5. Family: DnaQ-like 3'-5' exonuclease [53118]
    contains Pfam 00929

Protein Domains:

  1. Exonuclease domain of prokaryotic DNA polymerase [53119]
    part of Klenow fragment, KF
    1. Escherichia coli [TaxId: 562] [53120] (14)
      1. 2kfz picpicxref
        protein/DNA complex; complexed with mg, s, zn
        1. region a:324-518 [33683] picpiclink
      2. 2kfn picpicxref
        protein/DNA complex; complexed with mg, mn, s, zn
        1. region a:324-518 [33682] picpiclink
      3. 1kfs picpicxref
        protein/DNA complex; complexed with mg, zn; mutant
        1. region a:324-518 [33681] picpiclink
      4. 1d8y picpicxref
        1. region a:324-518 [33684] picpiclink
      5. 1d9d picpicxref
        1. region a:324-518 [33688] picpiclink
      6. 1krp picpicxref
        protein/DNA complex; complexed with pst, zn; mutant
        1. region a:324-518 [33685] picpiclink
      7. 1ksp picpicxref
        protein/DNA complex; complexed with pst, zn; mutant
        1. region a:324-518 [33687] picpiclink
      8. 1qsl picpicxref
        complexed with eu; mutant
        1. region a:324-518 [33686] picpiclink
      9. 2kzz picpicxref
        protein/DNA complex; complexed with zn
        1. region a:324-518 [33689] picpiclink
      10. 2kzm picpicxref
        protein/DNA complex; complexed with mn, zn
        1. region a:324-518 [33690] picpiclink
      11. 1d9f picpicxref
        1. region a:324-518 [33691] picpiclink
      12. 1dpi picpicxref
        complexed with zn
        1. region a:326-518 [33692] picpiclink
      13. 1kln picpicxref
        protein/DNA complex; complexed with zn; mutant
        1. region a:324-518 [33693] picpiclink
      14. 1kfd picpicxref
        complexed with ctp
        1. region a:324-518 [33694] picpiclink
    2. Thermus aquaticus [TaxId: 271] [53121] (13)
      1. 1qtm picpicxref
        protein/DNA complex; complexed with 2dt, mg, ttp
        1. region a:293-422 [33695] picpiclink
      2. 1qsy picpicxref
        protein/DNA complex; complexed with 2da, dad, mg; mutant
        1. region a:293-422 [33700] picpiclink
      3. 1cmw picpicxrefxrefxref
        1. region a:290-422 [33701] picpiclink
      4. 1qss picpicxref
        protein/DNA complex; complexed with ddg, dg3, mg; mutant
        1. region a:293-422 [33697] picpiclink
      5. 1jxe picpicxref
        1. region a:293-422 [33705] picpiclink
      6. 3ktq picpicxref
        complexed with ctp, ddc, mg
        1. region a:293-422 [33696] picpiclink
      7. 1bgx picpicxrefxrefxrefxrefxrefxrefxref
        1. region t:290-422 [33699] picpiclink
      8. 1taq picpicxrefxrefxref
        complexed with bgl, zn; mutant
        1. region a:290-422 [33698] picpiclink
      9. 2ktq picpicxref
        complexed with ctp, ddc, mg
        1. region a:295-422 [33702] picpiclink
      10. 5ktq picpicxref
        complexed with ctp
        1. region a:290-422 [33704] picpiclink
      11. 1ktq picpicxref
        1. region a:290-422 [33703] picpiclink
      12. 4ktq picpicxref
        complexed with ddc
        1. region a:294-422 [33706] picpiclink
      13. 1tau picpicxrefxrefxref
        protein/DNA complex; complexed with bgl, zn
        1. region a:290-422 [33707] picpiclink
    3. Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422] [53122] (45)
      SQ Q45458 298-876 # 88% sequence identity ! SQ Q5KWC1 299-878 # 99% sequence identity; Geobacillus kaustophilus TaxID:1462
      1. 2hhv picpicxref
        automatically matched to d1l3sa1
        complexed with 6og, mg, so4, suc
        1. region a:298-468 [136514] picpiclink
      2. 1u4b picpicxref
        complexed with 8og, mg, so4, suc
        1. region a:299-468 [107664] picpiclink
      3. 1nk4 picpicxref
        complexed with mg, so4, suc
        1. region a:297-468 [91923] picpiclink
      4. 1njx picpicxref
        complexed with mg, so4, suc
        1. region a:297-468 [91915] picpiclink
      5. 1l3s picpicxref
        complexed with mg, so4, suc
        1. region a:297-468 [84521] picpiclink
      6. 1nk0 picpicxref
        complexed with mes, so4, suc
        1. region a:297-468 [91921] picpiclink
      7. 1l3t picpicxref
        complexed with mg, so4, suc
        1. region a:297-468 [84523] picpiclink
      8. 1l3v picpicxref
        complexed with mg, so4, suc
        1. region a:297-468 [84527] picpiclink
      9. 1nkc picpicxref
        complexed with mg, so4, suc
        1. region a:297-468 [91937] picpiclink
      10. 2hhu picpicxref
        automatically matched to d1l3sa1
        complexed with 6og, dcp, mg, so4, suc
        1. region a:298-468 [136512] picpiclink
      11. 1l3u picpicxref
        complexed with mg, so4, suc
        1. region a:297-468 [84525] picpiclink
      12. 2hhq picpicxref
        automatically matched to d1l3sa1
        complexed with 6og, mg, so4, suc
        1. region a:298-468 [136506] picpiclink
      13. 1nke picpicxref
        complexed with dcp, mg, so4, suc
        1. region a:297-468 [91939] picpiclink
      14. 2hhw picpicxrefxref
        automatically matched to d1l3sa1
        complexed with 23t, 6og, ddg, mn, so4, suc; mutant
        1. region a:297-468 [136516] picpiclink
      15. 2hhs picpicxref
        automatically matched to d1l3sa1
        complexed with 6og, mg, so4, suc
        1. region a:298-468 [136508] picpiclink
      16. 2hhw picpicxrefxref
        automatically matched to d1l3sa1
        complexed with 23t, 6og, ddg, mn, so4, suc; mutant
        1. region d:297-468 [136518] picpiclink
      17. 1nk8 picpicxref
        complexed with mg, so4, suc
        1. region a:297-468 [91931] picpiclink
      18. 1nk7 picpicxref
        complexed with mg, so4, suc
        1. region a:297-468 [91929] picpiclink
      19. 1nk9 picpicxref
        complexed with mg, so4, suc
        1. region a:297-468 [91933] picpiclink
      20. 1l5u picpicxref
        complexed with mg, so4, suc
        1. region a:297-468 [84529] picpiclink
      21. 1njw picpicxref
        complexed with mg, so4, suc
        1. region a:297-468 [91913] picpiclink
      22. 2hw3 picpicxref
        automatically matched to d1l3sa1
        complexed with 6og, mg, so4, suc
        1. region a:298-468 [136819] picpiclink
      23. 2hvi picpicxrefxref
        automatically matched to d1l3sa1
        complexed with dct, ddg, mg, so4, suc
        1. region a:298-468 [136808] picpiclink
      24. 2hvi picpicxrefxref
        automatically matched to d1l3sa1
        complexed with dct, ddg, mg, so4, suc
        1. region d:298-468 [136810] picpiclink
      25. 1u45 picpicxref
        complexed with 8og, mg, so4, suc
        1. region a:299-468 [107654] picpiclink
      26. 1xc9 picpicxref
        complexed with bp, mg, so4, suc
        1. region a:297-468 [115111] picpiclink
      27. 2hht picpicxref
        automatically matched to d1l3sa1
        complexed with 6og, mg, so4, suc
        1. region a:298-468 [136510] picpiclink
      28. 1njz picpicxref
        complexed with mg, so4, suc
        1. region a:297-468 [91919] picpiclink
      29. 1u47 picpicxref
        complexed with 8og, mg, so4, suc
        1. region a:299-468 [107658] picpiclink
      30. 1njy picpicxref
        complexed with mg, so4, suc, ttp
        1. region a:297-468 [91917] picpiclink
      31. 1nkb picpicxref
        complexed with mg, so4, suc
        1. region a:297-468 [91935] picpiclink
      32. 1ua1 picpicxref
        complexed with af, so4
        1. region a:297-468 [107755] picpiclink
      33. 1nk5 picpicxref
        complexed with mg, so4, suc
        1. region a:297-468 [91925] picpiclink
      34. 1u48 picpicxref
        complexed with 8og, mg, so4, suc
        1. region a:299-468 [107660] picpiclink
      35. 1u49 picpicxref
        complexed with 8og, mg, so4, suc
        1. region a:299-468 [107662] picpiclink
      36. 1nk6 picpicxref
        complexed with so4, suc
        1. region a:297-468 [91927] picpiclink
      37. 1xwl picpicxref
        complexed with so4
        1. region a:297-468 [33708] picpiclink
      38. 2bdp picpicxref
        protein/DNA complex; complexed with mg, so4
        1. region a:297-468 [33709] picpiclink
      39. 1ua0 picpicxref
        complexed with af, so4, suc
        1. region a:297-468 [107753] picpiclink
      40. 4bdp picpicxref
        protein/DNA complex; complexed with mg, so4
        1. region a:297-468 [33710] picpiclink
      41. 2hhx picpicxref
        automatically matched to d1l3sa1
        complexed with 6og, so4, suc
        1. region a:298-468 [136520] picpiclink
      42. 1lv5 picpicxref
        complexed with dcp, mg, mn, so4; mutant
        1. region a:297-468 [84719] picpiclink
        2. region b:297-468 [84721] picpiclink
      43. 2hvh picpicxrefxref
        automatically matched to d1l3sa1
        complexed with 6og, dct, ddg, mn, so4, suc
        1. region a:298-468 [136804] picpiclink
      44. 2hvh picpicxrefxref
        automatically matched to d1l3sa1
        complexed with 6og, dct, ddg, mn, so4, suc
        1. region d:298-468 [136806] picpiclink
      45. 3bdp picpicxref
        protein/DNA complex; complexed with 2dt, so4
        1. region a:297-468 [33711] picpiclink
  2. Exonuclease domain of T7 DNA polymerase [53123]
    1. Bacteriophage T7 [TaxId: 10760] [53124] (16)
      SQ P00581
      1. 1x9m picpicxrefxref
        complexed with 2dt, 8fg, mg; mutant
        1. region a:1-210 [114999] picpiclink
      2. 1tk5 picpicxrefxref
        complexed with 1pe, ddg, mes, mg, so4
        1. region a:1-210 [107074] picpiclink
      3. 1t7p picpicxrefxref
        protein/DNA complex; complexed with 2da, dg3, mg; mutant
        1. region a:1-210 [33712] picpiclink
      4. 1x9w picpicxrefxref
        complexed with 2dt, mg; mutant
        1. region a:1-210 [115008] picpiclink
      5. 1sl2 picpicxrefxref
        complexed with 2da, dad, mg, ttd; mutant
        1. region a:1-210 [105706] picpiclink
      6. 1tkd picpicxrefxref
        complexed with 1pe, 8og, d3t, doc, mes, mg, so4
        1. region a:1-210 [107086] picpiclink
      7. 1skr picpicxrefxref
        complexed with 2da, dad, mg; mutant
        1. region a:1-210 [105684] picpiclink
      8. 1sl1 picpicxrefxref
        complexed with 2da, mg, ttd; mutant
        1. region a:1-210 [105703] picpiclink
      9. 1tk0 picpicxrefxref
        complexed with 1pe, 8og, dct, ddg, mes, mg, so4; mutant
        1. region a:1-210 [107063] picpiclink
      10. 1tk8 picpicxrefxref
        complexed with 1pe, 2da, 8og, d3t, mes, mg, so4
        1. region a:1-210 [107079] picpiclink
      11. 1sks picpicxrefxref
        complexed with 2dt, mg, ttd; mutant
        1. region a:1-210 [105687] picpiclink
      12. 1skw picpicxrefxref
        complexed with 2dt, mg; mutant
        1. region a:1-210 [105694] picpiclink
      13. 1t8e picpicxrefxref
        complexed with 2dt, dct, mes, mg, pg4, so4
        1. region a:1-210 [112316] picpiclink
      14. 1x9s picpicxrefxref
        complexed with 2dt, mg; mutant
        1. region a:1-210 [115005] picpiclink
      15. 1zyq picpicxrefxref
        automatically matched to d1skra1
        complexed with 8og, dad, ddg, mg; mutant
        1. region a:1-210 [125846] picpiclink
      16. 1sl0 picpicxrefxref
        complexed with 2dt, dad, mg; mutant
        1. region a:1-210 [105697] picpiclink
        2. region c:1-210 [105700] picpiclink
  3. Exonuclease domain of family B DNA polymerases [53125]
    elaborated with additional structures and the N-terminal subdomain
    1. Escherichia coli [TaxId: 562] [102482] (1)
      DNA polymerase II, additional N-terminal subdomain has an OB-fold with a ferredoxin-like fold insertion
      1. 1q8i picpicxref
        mutant
        1. region a:2-389 [96208] picpiclink
    2. Bacteriophage T4 [TaxId: 10665] [53126] (2)
      additional N-terminal subdomain contains rudimental OB-fold
      1. 1noy picpic
        exonuclease domain only
        protein/DNA complex; complexed with mn, zn
        1. chain a [33713] picpiclink
        2. chain b [33714] picpiclink
      2. 1noz picpic
        exonuclease domain only
        1. chain a [33715] picpiclink
        2. chain b [33716] picpiclink
    3. Bacteriophage RB69 [TaxId: 12353] [53127] (27)
      additional N-terminal subdomain contains rudimental OB-fold and rudimental ferredoxin-like fold
      1. 1ih7 picpicxref
        complexed with gmp, k
        1. region a:1-375 [62375] picpiclink
      2. 3cq8 picpicxref
        automatically matched to d1clqa1
        complexed with ca, gol, na, ttp; mutant
        1. region a:1-375 [156927] picpiclink
      3. 1ig9 picpicxref
        complexed with ca, doc, ttp; mutant
        1. region a:1-375 [62367] picpiclink
      4. 2dy4 picpicxrefxrefxrefxref
        automatically matched to d1clqa1
        complexed with ctg; mutant
        1. region a:1-375 [131882] picpiclink
      5. 2dy4 picpicxrefxrefxrefxref
        automatically matched to d1clqa1
        complexed with ctg; mutant
        1. region b:1-375 [131884] picpiclink
      6. 2dy4 picpicxrefxrefxrefxref
        automatically matched to d1clqa1
        complexed with ctg; mutant
        1. region c:1-375 [131886] picpiclink
      7. 2dy4 picpicxrefxrefxrefxref
        automatically matched to d1clqa1
        complexed with ctg; mutant
        1. region d:1-375 [131888] picpiclink
      8. 2ozm picpicxref
        automatically matched to d1clqa1
        complexed with 3dr, ddg, mg, n5p; mutant
        1. region a:1-375 [149115] picpiclink
      9. 1clq picpicxref
        1. region a:1-375 [33717] picpiclink
      10. 2ozs picpicxref
        automatically matched to d1clqa1
        complexed with ddg, dtp, mg; mutant
        1. region a:1-375 [149127] picpiclink
      11. 2p5g picpicxrefxrefxrefxref
        automatically matched to d1clqa1
        complexed with 3dr; mutant
        1. region a:1-375 [149240] picpiclink
      12. 2p5g picpicxrefxrefxrefxref
        automatically matched to d1clqa1
        complexed with 3dr; mutant
        1. region b:1-375 [149242] picpiclink
      13. 2p5g picpicxrefxrefxrefxref
        automatically matched to d1clqa1
        complexed with 3dr; mutant
        1. region c:1-375 [149244] picpiclink
      14. 2p5g picpicxrefxrefxrefxref
        automatically matched to d1clqa1
        complexed with 3dr; mutant
        1. region d:2-375 [149246] picpiclink
      15. 1q9y picpicxref
        complexed with 8og, ca, dcp, doc; mutant
        1. region a:1-375 [96336] picpiclink
      16. 1q9x picpicxref
        complexed with 3dr, ca, dgp, doc; mutant
        1. region a:1-375 [96328] picpiclink
        2. region b:1-375 [96330] picpiclink
        3. region c:1-375 [96332] picpiclink
        4. region d:1-375 [96334] picpiclink
      17. 2p5o picpicxrefxrefxrefxref
        automatically matched to d1clqa1
        complexed with 3dr; mutant
        1. region a:1-375 [139498] picpiclink
      18. 2p5o picpicxrefxrefxrefxref
        automatically matched to d1clqa1
        complexed with 3dr; mutant
        1. region b:1-375 [139500] picpiclink
      19. 2p5o picpicxrefxrefxrefxref
        automatically matched to d1clqa1
        complexed with 3dr; mutant
        1. region c:1-375 [139502] picpiclink
      20. 2p5o picpicxrefxrefxrefxref
        automatically matched to d1clqa1
        complexed with 3dr; mutant
        1. region d:1-375 [139504] picpiclink
      21. 2oyq picpicxrefxrefxrefxref
        automatically matched to d1clqa1
        complexed with 3dr, mg, n5i, n5p; mutant
        1. region a:1-375 [149070] picpiclink
      22. 2oyq picpicxrefxrefxrefxref
        automatically matched to d1clqa1
        complexed with 3dr, mg, n5i, n5p; mutant
        1. region b:1-375 [149072] picpiclink
      23. 2oyq picpicxrefxrefxrefxref
        automatically matched to d1clqa1
        complexed with 3dr, mg, n5i, n5p; mutant
        1. region c:1-375 [149074] picpiclink
      24. 2oyq picpicxrefxrefxrefxref
        automatically matched to d1clqa1
        complexed with 3dr, mg, n5i, n5p; mutant
        1. region d:2-375 [149076] picpiclink
      25. 1waj picpicxref
        complexed with 5gp
        1. region a:1-375 [33718] picpiclink
      26. 1waf picpicxref
        complexed with gmp
        1. region a:1-375 [33719] picpiclink
        2. region b:1-375 [33720] picpiclink
      27. 2atq picpicxrefxref
        automatically matched to d1clqa1
        complexed with gdp, zn; mutant
        1. region a:1-375 [127303] picpiclink
    4. Archaeon Thermococcus gorgonarius [TaxId: 71997] [53128] (3)
      additional N-terminal subdomain contains rudimental OB-fold but complete ferredoxin-like fold
      1. 1tgo picpicxref
        1. region a:1-347 [33721] picpiclink
      2. 2vwk picpicxref
        automatically matched to d1tgoa1
        complexed with na, so4; mutant
        1. region a:1-347 [153677] picpiclink
      3. 2vwj picpicxref
        automatically matched to d1qqca1
        complexed with k; mutant
        1. region a:1-347 [153675] picpiclink
    5. Archaeon Thermococcus sp., 9on-7 [TaxId: 35749] [53129] (1)
      additional N-terminal subdomain contains rudimental OB-fold but complete ferredoxin-like fold
      1. 1qht picpicxref
        mutant
        1. region a:1-347 [33722] picpiclink
    6. Archaeon Desulfurococcus tok [TaxId: 108142] [53130] (2)
      additional N-terminal subdomain contains rudimental OB-fold but complete ferredoxin-like fold
      1. 1d5a picpicxref
        complexed with mg, so4
        1. region a:1-347 [33723] picpiclink
      2. 1qqc picpicxref
        complexed with mg, so4
        1. region a:1-347 [33724] picpiclink
    7. Archaeon Pyrococcus kodakaraensis [TaxId: 311400] [53131] (2)
      SQ P56689 1-758 # 93% sequence identity; Thermococcus kodakarensis KOD1 TaxID: 69014
      additional N-terminal subdomain contains rudimental OB-fold but complete ferredoxin-like fold
      1. 1wn7 picpicxref
        complexed with gol, ni; mutant
        1. region a:1-347 [121088] picpiclink
      2. 1wns picpicxref
        1. region a:1-347 [109437] picpiclink
    8. Sulfolobus solfataricus [TaxId: 2287] [117647] (1)
      SQ P26811 40-864
      1. 1s5j picpicxref
        complexed with mg, sul
        1. region a:40-449 [112040] picpiclink
  4. N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III [82444]
    1. Escherichia coli [TaxId: 562] [82445] (5)
      1. 2gui picpic
        automatically matched to d1j53a_
        complexed with egl, mn, peg, u5p
        1. region a:7-180 [135737] picpiclink
      2. 1j54 picpic
        complexed with egl, mn, tmp
        1. chain a [77077] picpiclink
      3. 1j53 picpic
        complexed with egl, mn, tmp
        1. chain a [77076] picpiclink
      4. 2ido picpicxrefxref
        automatically matched to d1j53a_
        complexed with edo, mn, tmp
        1. region a:7-180 [137284] picpiclink
      5. 2ido picpicxrefxref
        automatically matched to d1j53a_
        complexed with edo, mn, tmp
        1. region c:7-180 [137286] picpiclink
  5. Exonuclease I [53132]
    also includes an alpha+beta domain with SH3-like like motif and non-globular C-terminal all-alpha region
    1. Escherichia coli [TaxId: 562] [53133] (1)
      1. 1fxx picpic
        complexed with gol, mg, po4
        1. chain a [33726] picpiclink
    2. Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333] [159630] (3)
      1. 2qxf picpic
        automatically matched to d1fxxa_
        complexed with mg, na, tmp
        1. region a:8-474 [151455] picpiclink
      2. 3c95 picpic
        automatically matched to d1fxxa_
        complexed with mg
        1. region a:8-474 [156121] picpiclink
      3. 3c94 picpic
        automatically matched to d1fxxa_
        complexed with mg
        1. region a:8-474 [156120] picpiclink
  6. Oligoribonuclease [89719]
    1. Haemophilus influenzae [TaxId: 727] [89720] (1)
      HI1715
      1. 1j9a picpic
        CASP4
        structural genomics
        complexed with mse, so4
        1. chain a [84135] picpiclink
    2. Escherichia coli [TaxId: 562] [142492] (6)
      SQ P0A784 1-180
      1. 2igi picpic
        automatically matched to d1ytaa1
        complexed with acy, cd, zn
        1. region a:1-180 [147657] picpiclink
      2. 2igi picpic
        automatically matched to d1ytaa1
        complexed with acy, cd, zn
        1. region b:2-180 [147658] picpiclink
      3. 1yta picpic
        complexed with flc
        1. region a:1-180 [124002] picpiclink
      4. 1yta picpic
        automatically matched to 1YTA A:1-180
        complexed with flc
        1. region b:1-180 [124003] picpiclink
      5. 1yta picpic
        automatically matched to 1YTA A:1-180
        complexed with flc
        1. region c:1-180 [124004] picpiclink
      6. 1yta picpic
        automatically matched to 1YTA A:1-180
        complexed with flc
        1. region d:1-180 [124005] picpiclink
  7. Hypothetical protein AT5G06450 [102483]
    forms a ring-shaped hexamer; function unknown
    1. Thale-cress (Arabidopsis thaliana) [TaxId: 3702] [102484] (7)
      1. 1vk0 picpic
        structural genomics
        1. chain a [100839] picpiclink
        2. chain b [100840] picpiclink
        3. chain c [100841] picpiclink
        4. chain d [100842] picpiclink
        5. chain e [100843] picpiclink
        6. chain f [100844] picpiclink
      2. 2q3s picpic
        automatically matched to d1vk0a_
        1. region a:1-206 [139802] picpiclink
      3. 2q3s picpic
        automatically matched to d1vk0a_
        1. region b:1-206 [139803] picpiclink
      4. 2q3s picpic
        automatically matched to d1vk0a_
        1. region c:1-206 [139804] picpiclink
      5. 2q3s picpic
        automatically matched to d1vk0a_
        1. region d:1-206 [139805] picpiclink
      6. 2q3s picpic
        automatically matched to d1vk0a_
        1. region e:1-206 [139806] picpiclink
      7. 2q3s picpic
        automatically matched to d1vk0a_
        1. region f:1-206 [139807] picpiclink
  8. Exonuclease ERI1 [117648]
    1. Human (Homo sapiens) [TaxId: 9606] [117649] (1)
      SQ Q8IV48 122-321
      1. 1w0h picpic
        complexed with amp, mg
        1. chain a [114064] picpiclink
  9. Exonuclease domain of phi29 DNA polymerase [117650]
    1. Bacteriophage phi-29 [TaxId: 10756] [117651] (18)
      SQ P03680
      1. 2py5 picpicxrefxref
        automatically matched to d1xhxa1
        complexed with edo; mutant
        1. region a:5-187 [149928] picpiclink
      2. 2py5 picpicxrefxref
        automatically matched to d1xhxa1
        complexed with edo; mutant
        1. region b:5-187 [149930] picpiclink
      3. 2pyj picpicxrefxref
        automatically matched to d1xhxa1
        complexed with dgt, doc, edo, mg, mn; mutant
        1. region a:5-187 [149943] picpiclink
      4. 2pyj picpicxrefxref
        automatically matched to d1xhxa1
        complexed with dgt, doc, edo, mg, mn; mutant
        1. region b:5-187 [149945] picpiclink
      5. 2pyl picpicxref
        automatically matched to d1xhxa1
        complexed with 2da, edo, mg, ttp; mutant
        1. region a:5-187 [149947] picpiclink
      6. 1xhx picpicxref
        complexed with mg, so4; mutant
        1. region a:5-187 [115305] picpiclink
      7. 1xi1 picpicxref
        complexed with mg; mutant
        1. region a:5-187 [115309] picpiclink
      8. 1xhz picpicxref
        mutant
        1. region a:5-187 [115307] picpiclink
      9. 2pzs picpicxrefxrefxrefxref
        automatically matched to d1xhxa1
        mutant
        1. region a:5-187 [149965] picpiclink
      10. 2pzs picpicxrefxrefxrefxref
        automatically matched to d1xhxa1
        mutant
        1. region b:5-187 [149967] picpiclink
      11. 2pzs picpicxrefxrefxrefxref
        automatically matched to d1xhxa1
        mutant
        1. region c:5-187 [149969] picpiclink
      12. 2pzs picpicxrefxrefxrefxref
        automatically matched to d1xhxa1
        mutant
        1. region d:5-187 [149971] picpiclink
      13. 2ex3 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with pb; mutant
        1. region a:6-187 [132498] picpiclink
      14. 2ex3 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2EX3 A:6-187
        complexed with pb; mutant
        1. region c:6-187 [132501] picpiclink
      15. 2ex3 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2EX3 A:6-187
        complexed with pb; mutant
        1. region e:6-187 [132504] picpiclink
      16. 2ex3 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2EX3 A:6-187
        complexed with pb; mutant
        1. region g:6-187 [132507] picpiclink
      17. 2ex3 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2EX3 A:6-187
        complexed with pb; mutant
        1. region i:6-187 [132510] picpiclink
      18. 2ex3 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2EX3 A:6-187
        complexed with pb; mutant
        1. region k:6-187 [132513] picpiclink
  10. Interferon-stimulated gene 20 kDa protein, ISG20 [117652]
    1. Human (Homo sapiens) [TaxId: 9606] [117653] (1)
      SQ Q96AZ6 6-178
      1. 1wlj picpic
        complexed with act, mn, u5p
        1. chain a [114734] picpiclink
  11. Exosome complex exonuclease RRP6 [142493]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [142494] (4)
      SQ Q12149 129-420
      1. 2hbk picpicxref
        automatically matched to 2HBJ A:129-420
        complexed with mn; mutant
        1. region a:129-420 [136314] picpiclink
      2. 2hbj picpicxref
        mutant
        1. region a:129-420 [136312] picpiclink
      3. 2hbl picpicxref
        automatically matched to 2HBJ A:129-420
        complexed with amp, mn, zn; mutant
        1. region a:129-420 [136316] picpiclink
      4. 2hbm picpicxref
        automatically matched to 2HBJ A:129-420
        complexed with mn, u, zn; mutant
        1. region a:129-420 [136318] picpiclink
  12. Ribonuclease D, catalytic domain [142495]
    1. Escherichia coli [TaxId: 562] [142496] (1)
      SQ P09155 1-193
      1. 1yt3 picpicxrefxref
        complexed with so4, zn
        1. region a:1-193 [123994] picpiclink
  13. Ribonuclease T [142497]
    1. Pseudomonas aeruginosa [TaxId: 287] [142498] (2)
      SQ Q9HY82 19-220
      1. 2f96 picpic
        complexed with mg
        1. region a:19-220 [133153] picpiclink
      2. 2f96 picpic
        automatically matched to 2F96 A:19-220
        complexed with mg
        1. region b:19-220 [133154] picpiclink
  14. Three prime repair exonuclease 2, TREX2 [142499]
    1. Human (Homo sapiens) [TaxId: 9606] [142500] (2)
      SQ Q9BQ50 44-271
      1. 1y97 picpic
        1. region a:1-228 [122773] picpiclink
      2. 1y97 picpic
        automatically matched to 1Y97 A:1-228
        1. region b:3-228 [122774] picpiclink
  15. Three prime repair exonuclease 1, TREX1 [159631]
    1. Mouse (Mus musculus) [TaxId: 10090] [159632] (18)
      SQ Q91XB0 5-234! SQ Q91XB0 9-234
      1. 3b6o picpic
        automatically matched to 2O4G A:9-234
        complexed with li, tmp
        1. region a:9-234 [154901] picpiclink
      2. 3b6o picpic
        automatically matched to 2O4G A:9-234
        complexed with li, tmp
        1. region b:9-234 [154902] picpiclink
      3. 3b6o picpic
        automatically matched to 2O4G A:9-234
        complexed with li, tmp
        1. region c:9-234 [154903] picpiclink
      4. 3b6o picpic
        automatically matched to 2O4G A:9-234
        complexed with li, tmp
        1. region d:9-234 [154904] picpiclink
      5. 2o4g picpic
        complexed with mg, tmp
        1. region a:9-234 [148584] picpiclink
      6. 2o4g picpic
        automatically matched to 2O4G A:9-234
        complexed with mg, tmp
        1. region b:9-234 [148585] picpiclink
      7. 2o4g picpic
        automatically matched to 2O4G A:9-234
        complexed with mg, tmp
        1. region c:9-234 [148586] picpiclink
      8. 2o4g picpic
        automatically matched to 2O4G A:9-234
        complexed with mg, tmp
        1. region d:9-234 [148587] picpiclink
      9. 2ioc picpic
        complexed with d5m, mn
        1. region a:5-234 [147742] picpiclink
      10. 2ioc picpic
        automatically matched to 2IOC A:5-234
        complexed with d5m, mn
        1. region b:8-234 [147743] picpiclink
      11. 2oa8 picpic
        automatically matched to 2IOC A:5-234
        complexed with ca
        1. region a:5-234 [148693] picpiclink
      12. 2oa8 picpic
        automatically matched to 2IOC A:5-234
        complexed with ca
        1. region b:5-234 [148694] picpiclink
      13. 3b6p picpic
        automatically matched to 2O4G A:9-234
        complexed with na, tmp, zn
        1. region a:9-234 [154905] picpiclink
      14. 3b6p picpic
        automatically matched to 2O4G A:9-234
        complexed with na, tmp, zn
        1. region b:9-234 [154906] picpiclink
      15. 3b6p picpic
        automatically matched to 2O4G A:9-234
        complexed with na, tmp, zn
        1. region c:9-234 [154907] picpiclink
      16. 3b6p picpic
        automatically matched to 2O4G A:9-234
        complexed with na, tmp, zn
        1. region d:9-234 [154908] picpiclink
      17. 2o4i picpic
        mutant
        1. region a:9-234 [148588] picpiclink
      18. 2o4i picpic
        automatically matched to 2O4I A:9-234
        mutant
        1. region b:9-234 [148589] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk