Structural Classification of Proteins
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Protein: Family B DNA polymerase from Archaeon Pyrococcus kodakaraensis [TaxId: 311400]

SQ P56689 1-758 # 93% sequence identity; Thermococcus kodakarensis KOD1 TaxID: 69014

Lineage:

  1. Root: scop
  2. Class: Multi-domain proteins (alpha and beta) [56572]
    Folds consisting of two or more domains belonging to different classes
  3. Fold: DNA/RNA polymerases [56671]
    divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
  4. Superfamily: DNA/RNA polymerases [56672]
    "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
    link to SUPERFAMILY database - Superfamily
  5. Family: DNA polymerase I [56673]
  6. Protein: Family B DNA polymerase [56680]
  7. Species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400] [56685]
    SQ P56689 1-758 # 93% sequence identity; Thermococcus kodakarensis KOD1 TaxID: 69014

PDB Entry Domains:

  1. 1wn7 picpicxref
    complexed with gol, ni; mutant
    1. region a:348-756 [121089] picpiclink
  2. 1wns picpicxref
    1. region a:348-758 [109438] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk