Structural Classification of Proteins
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Protein: Exonuclease domain of prokaryotic DNA polymerase from Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]

SQ Q45458 298-876 # 88% sequence identity ! SQ Q5KWC1 299-878 # 99% sequence identity; Geobacillus kaustophilus TaxID:1462

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Ribonuclease H-like motif [53066]
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. Superfamily: Ribonuclease H-like [53098]
    consists of one domain of this fold
    link to SUPERFAMILY database - Superfamily
  5. Family: DnaQ-like 3'-5' exonuclease [53118]
    contains Pfam 00929
  6. Protein: Exonuclease domain of prokaryotic DNA polymerase [53119]
    part of Klenow fragment, KF
  7. Species: Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422] [53122]
    SQ Q45458 298-876 # 88% sequence identity ! SQ Q5KWC1 299-878 # 99% sequence identity; Geobacillus kaustophilus TaxID:1462

PDB Entry Domains:

  1. 2hhv picpicxref
    automatically matched to d1l3sa1
    complexed with 6og, mg, so4, suc
    1. region a:298-468 [136514] picpiclink
  2. 1u4b picpicxref
    complexed with 8og, mg, so4, suc
    1. region a:299-468 [107664] picpiclink
  3. 1nk4 picpicxref
    complexed with mg, so4, suc
    1. region a:297-468 [91923] picpiclink
  4. 1njx picpicxref
    complexed with mg, so4, suc
    1. region a:297-468 [91915] picpiclink
  5. 1l3s picpicxref
    complexed with mg, so4, suc
    1. region a:297-468 [84521] picpiclink
  6. 1nk0 picpicxref
    complexed with mes, so4, suc
    1. region a:297-468 [91921] picpiclink
  7. 1l3t picpicxref
    complexed with mg, so4, suc
    1. region a:297-468 [84523] picpiclink
  8. 1l3v picpicxref
    complexed with mg, so4, suc
    1. region a:297-468 [84527] picpiclink
  9. 1nkc picpicxref
    complexed with mg, so4, suc
    1. region a:297-468 [91937] picpiclink
  10. 2hhu picpicxref
    automatically matched to d1l3sa1
    complexed with 6og, dcp, mg, so4, suc
    1. region a:298-468 [136512] picpiclink
  11. 1l3u picpicxref
    complexed with mg, so4, suc
    1. region a:297-468 [84525] picpiclink
  12. 2hhq picpicxref
    automatically matched to d1l3sa1
    complexed with 6og, mg, so4, suc
    1. region a:298-468 [136506] picpiclink
  13. 1nke picpicxref
    complexed with dcp, mg, so4, suc
    1. region a:297-468 [91939] picpiclink
  14. 2hhw picpicxrefxref
    automatically matched to d1l3sa1
    complexed with 23t, 6og, ddg, mn, so4, suc; mutant
    1. region a:297-468 [136516] picpiclink
  15. 2hhs picpicxref
    automatically matched to d1l3sa1
    complexed with 6og, mg, so4, suc
    1. region a:298-468 [136508] picpiclink
  16. 2hhw picpicxrefxref
    automatically matched to d1l3sa1
    complexed with 23t, 6og, ddg, mn, so4, suc; mutant
    1. region d:297-468 [136518] picpiclink
  17. 1nk8 picpicxref
    complexed with mg, so4, suc
    1. region a:297-468 [91931] picpiclink
  18. 1nk7 picpicxref
    complexed with mg, so4, suc
    1. region a:297-468 [91929] picpiclink
  19. 1nk9 picpicxref
    complexed with mg, so4, suc
    1. region a:297-468 [91933] picpiclink
  20. 1l5u picpicxref
    complexed with mg, so4, suc
    1. region a:297-468 [84529] picpiclink
  21. 1njw picpicxref
    complexed with mg, so4, suc
    1. region a:297-468 [91913] picpiclink
  22. 2hw3 picpicxref
    automatically matched to d1l3sa1
    complexed with 6og, mg, so4, suc
    1. region a:298-468 [136819] picpiclink
  23. 2hvi picpicxrefxref
    automatically matched to d1l3sa1
    complexed with dct, ddg, mg, so4, suc
    1. region a:298-468 [136808] picpiclink
  24. 2hvi picpicxrefxref
    automatically matched to d1l3sa1
    complexed with dct, ddg, mg, so4, suc
    1. region d:298-468 [136810] picpiclink
  25. 1u45 picpicxref
    complexed with 8og, mg, so4, suc
    1. region a:299-468 [107654] picpiclink
  26. 1xc9 picpicxref
    complexed with bp, mg, so4, suc
    1. region a:297-468 [115111] picpiclink
  27. 2hht picpicxref
    automatically matched to d1l3sa1
    complexed with 6og, mg, so4, suc
    1. region a:298-468 [136510] picpiclink
  28. 1njz picpicxref
    complexed with mg, so4, suc
    1. region a:297-468 [91919] picpiclink
  29. 1u47 picpicxref
    complexed with 8og, mg, so4, suc
    1. region a:299-468 [107658] picpiclink
  30. 1njy picpicxref
    complexed with mg, so4, suc, ttp
    1. region a:297-468 [91917] picpiclink
  31. 1nkb picpicxref
    complexed with mg, so4, suc
    1. region a:297-468 [91935] picpiclink
  32. 1ua1 picpicxref
    complexed with af, so4
    1. region a:297-468 [107755] picpiclink
  33. 1nk5 picpicxref
    complexed with mg, so4, suc
    1. region a:297-468 [91925] picpiclink
  34. 1u48 picpicxref
    complexed with 8og, mg, so4, suc
    1. region a:299-468 [107660] picpiclink
  35. 1u49 picpicxref
    complexed with 8og, mg, so4, suc
    1. region a:299-468 [107662] picpiclink
  36. 1nk6 picpicxref
    complexed with so4, suc
    1. region a:297-468 [91927] picpiclink
  37. 1xwl picpicxref
    complexed with so4
    1. region a:297-468 [33708] picpiclink
  38. 2bdp picpicxref
    protein/DNA complex; complexed with mg, so4
    1. region a:297-468 [33709] picpiclink
  39. 1ua0 picpicxref
    complexed with af, so4, suc
    1. region a:297-468 [107753] picpiclink
  40. 4bdp picpicxref
    protein/DNA complex; complexed with mg, so4
    1. region a:297-468 [33710] picpiclink
  41. 2hhx picpicxref
    automatically matched to d1l3sa1
    complexed with 6og, so4, suc
    1. region a:298-468 [136520] picpiclink
  42. 1lv5 picpicxref
    complexed with dcp, mg, mn, so4; mutant
    1. region a:297-468 [84719] picpiclink
    2. region b:297-468 [84721] picpiclink
  43. 2hvh picpicxrefxref
    automatically matched to d1l3sa1
    complexed with 6og, dct, ddg, mn, so4, suc
    1. region a:298-468 [136804] picpiclink
  44. 2hvh picpicxrefxref
    automatically matched to d1l3sa1
    complexed with 6og, dct, ddg, mn, so4, suc
    1. region d:298-468 [136806] picpiclink
  45. 3bdp picpicxref
    protein/DNA complex; complexed with 2dt, so4
    1. region a:297-468 [33711] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk