Structural Classification of Proteins
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Protein: DNA polymerase I (Klenow fragment) from Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]

SQ Q5KWC1 299-878 # 99% sequence identity; Geobacillus kaustophilus TaxID:1462
SQ Q45458 298-876 # 88% sequence identity

Lineage:

  1. Root: scop
  2. Class: Multi-domain proteins (alpha and beta) [56572]
    Folds consisting of two or more domains belonging to different classes
  3. Fold: DNA/RNA polymerases [56671]
    divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
  4. Superfamily: DNA/RNA polymerases [56672]
    "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
    link to SUPERFAMILY database - Superfamily
  5. Family: DNA polymerase I [56673]
  6. Protein: DNA polymerase I (Klenow fragment) [56674]
  7. Species: Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422] [56677]
    SQ Q5KWC1 299-878 # 99% sequence identity; Geobacillus kaustophilus TaxID:1462
    SQ Q45458 298-876 # 88% sequence identity

PDB Entry Domains:

  1. 2hhv picpicxref
    automatically matched to d1l3sa2
    complexed with 6og, mg, so4, suc
    1. region a:469-876 [136515] picpiclink
  2. 1u4b picpicxref
    complexed with 8og, mg, so4, suc
    1. region a:469-876 [107665] picpiclink
  3. 1nk4 picpicxref
    complexed with mg, so4, suc
    1. region a:469-876 [91924] picpiclink
  4. 1njx picpicxref
    complexed with mg, so4, suc
    1. region a:469-876 [91916] picpiclink
  5. 1l3s picpicxref
    complexed with mg, so4, suc
    1. region a:469-876 [84522] picpiclink
  6. 1nk0 picpicxref
    complexed with mes, so4, suc
    1. region a:469-876 [91922] picpiclink
  7. 1l3t picpicxref
    complexed with mg, so4, suc
    1. region a:469-876 [84524] picpiclink
  8. 1l3v picpicxref
    complexed with mg, so4, suc
    1. region a:469-876 [84528] picpiclink
  9. 1nkc picpicxref
    complexed with mg, so4, suc
    1. region a:469-876 [91938] picpiclink
  10. 2hhu picpicxref
    automatically matched to d1l3sa2
    complexed with 6og, dcp, mg, so4, suc
    1. region a:469-876 [136513] picpiclink
  11. 1l3u picpicxref
    complexed with mg, so4, suc
    1. region a:469-876 [84526] picpiclink
  12. 2hhq picpicxref
    automatically matched to d1l3sa2
    complexed with 6og, mg, so4, suc
    1. region a:469-876 [136507] picpiclink
  13. 1nke picpicxref
    complexed with dcp, mg, so4, suc
    1. region a:469-876 [91940] picpiclink
  14. 2hhw picpicxrefxref
    automatically matched to d1l3sa2
    complexed with 23t, 6og, ddg, mn, so4, suc; mutant
    1. region a:469-876 [136517] picpiclink
  15. 2hhs picpicxref
    automatically matched to d1l3sa2
    complexed with 6og, mg, so4, suc
    1. region a:469-876 [136509] picpiclink
  16. 2hhw picpicxrefxref
    automatically matched to d1l3sa2
    complexed with 23t, 6og, ddg, mn, so4, suc; mutant
    1. region d:469-876 [136519] picpiclink
  17. 1nk8 picpicxref
    complexed with mg, so4, suc
    1. region a:469-876 [91932] picpiclink
  18. 1nk7 picpicxref
    complexed with mg, so4, suc
    1. region a:469-876 [91930] picpiclink
  19. 1nk9 picpicxref
    complexed with mg, so4, suc
    1. region a:469-876 [91934] picpiclink
  20. 1l5u picpicxref
    complexed with mg, so4, suc
    1. region a:469-876 [84530] picpiclink
  21. 1njw picpicxref
    complexed with mg, so4, suc
    1. region a:469-876 [91914] picpiclink
  22. 2hw3 picpicxref
    automatically matched to d1l3sa2
    complexed with 6og, mg, so4, suc
    1. region a:469-876 [136820] picpiclink
  23. 2hvi picpicxrefxref
    automatically matched to d1l3sa2
    complexed with dct, ddg, mg, so4, suc
    1. region a:469-876 [136809] picpiclink
  24. 2hvi picpicxrefxref
    automatically matched to d1l3sa2
    complexed with dct, ddg, mg, so4, suc
    1. region d:469-876 [136811] picpiclink
  25. 1u45 picpicxref
    complexed with 8og, mg, so4, suc
    1. region a:469-876 [107655] picpiclink
  26. 1xc9 picpicxref
    complexed with bp, mg, so4, suc
    1. region a:469-876 [115112] picpiclink
  27. 2hht picpicxref
    automatically matched to d1l3sa2
    complexed with 6og, mg, so4, suc
    1. region a:469-876 [136511] picpiclink
  28. 1njz picpicxref
    complexed with mg, so4, suc
    1. region a:469-876 [91920] picpiclink
  29. 1u47 picpicxref
    complexed with 8og, mg, so4, suc
    1. region a:469-876 [107659] picpiclink
  30. 1njy picpicxref
    complexed with mg, so4, suc, ttp
    1. region a:469-876 [91918] picpiclink
  31. 1nkb picpicxref
    complexed with mg, so4, suc
    1. region a:469-876 [91936] picpiclink
  32. 1ua1 picpicxref
    complexed with af, so4
    1. region a:469-876 [107756] picpiclink
  33. 1nk5 picpicxref
    complexed with mg, so4, suc
    1. region a:469-876 [91926] picpiclink
  34. 1u48 picpicxref
    complexed with 8og, mg, so4, suc
    1. region a:469-876 [107661] picpiclink
  35. 1u49 picpicxref
    complexed with 8og, mg, so4, suc
    1. region a:469-876 [107663] picpiclink
  36. 1nk6 picpicxref
    complexed with so4, suc
    1. region a:469-876 [91928] picpiclink
  37. 1xwl picpicxref
    complexed with so4
    1. region a:469-876 [43001] picpiclink
  38. 2bdp picpicxref
    protein/DNA complex; complexed with mg, so4
    1. region a:469-876 [43002] picpiclink
  39. 1ua0 picpicxref
    complexed with af, so4, suc
    1. region a:469-876 [107754] picpiclink
  40. 4bdp picpicxref
    protein/DNA complex; complexed with mg, so4
    1. region a:469-876 [43003] picpiclink
  41. 2hhx picpicxref
    automatically matched to d1l3sa2
    complexed with 6og, so4, suc
    1. region a:469-876 [136521] picpiclink
  42. 1lv5 picpicxref
    complexed with dcp, mg, mn, so4; mutant
    1. region a:469-876 [84720] picpiclink
    2. region b:469-876 [84722] picpiclink
  43. 2hvh picpicxrefxref
    automatically matched to d1l3sa2
    complexed with 6og, dct, ddg, mn, so4, suc
    1. region a:469-876 [136805] picpiclink
  44. 2hvh picpicxrefxref
    automatically matched to d1l3sa2
    complexed with 6og, dct, ddg, mn, so4, suc
    1. region d:469-876 [136807] picpiclink
  45. 3bdp picpicxref
    protein/DNA complex; complexed with 2dt, so4
    1. region a:469-876 [43004] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk