Structural Classification of Proteins
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Protein: Exonuclease domain of family B DNA polymerases from Bacteriophage RB69 [TaxId: 12353]

additional N-terminal subdomain contains rudimental OB-fold and rudimental ferredoxin-like fold

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Ribonuclease H-like motif [53066]
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. Superfamily: Ribonuclease H-like [53098]
    consists of one domain of this fold
    link to SUPERFAMILY database - Superfamily
  5. Family: DnaQ-like 3'-5' exonuclease [53118]
    contains Pfam 00929
  6. Protein: Exonuclease domain of family B DNA polymerases [53125]
    elaborated with additional structures and the N-terminal subdomain
  7. Species: Bacteriophage RB69 [TaxId: 12353] [53127]
    additional N-terminal subdomain contains rudimental OB-fold and rudimental ferredoxin-like fold

PDB Entry Domains:

  1. 1ih7 picpicxref
    complexed with gmp, k
    1. region a:1-375 [62375] picpiclink
  2. 3cq8 picpicxref
    automatically matched to d1clqa1
    complexed with ca, gol, na, ttp; mutant
    1. region a:1-375 [156927] picpiclink
  3. 1ig9 picpicxref
    complexed with ca, doc, ttp; mutant
    1. region a:1-375 [62367] picpiclink
  4. 2dy4 picpicxrefxrefxrefxref
    automatically matched to d1clqa1
    complexed with ctg; mutant
    1. region a:1-375 [131882] picpiclink
  5. 2dy4 picpicxrefxrefxrefxref
    automatically matched to d1clqa1
    complexed with ctg; mutant
    1. region b:1-375 [131884] picpiclink
  6. 2dy4 picpicxrefxrefxrefxref
    automatically matched to d1clqa1
    complexed with ctg; mutant
    1. region c:1-375 [131886] picpiclink
  7. 2dy4 picpicxrefxrefxrefxref
    automatically matched to d1clqa1
    complexed with ctg; mutant
    1. region d:1-375 [131888] picpiclink
  8. 2ozm picpicxref
    automatically matched to d1clqa1
    complexed with 3dr, ddg, mg, n5p; mutant
    1. region a:1-375 [149115] picpiclink
  9. 1clq picpicxref
    1. region a:1-375 [33717] picpiclink
  10. 2ozs picpicxref
    automatically matched to d1clqa1
    complexed with ddg, dtp, mg; mutant
    1. region a:1-375 [149127] picpiclink
  11. 2p5g picpicxrefxrefxrefxref
    automatically matched to d1clqa1
    complexed with 3dr; mutant
    1. region a:1-375 [149240] picpiclink
  12. 2p5g picpicxrefxrefxrefxref
    automatically matched to d1clqa1
    complexed with 3dr; mutant
    1. region b:1-375 [149242] picpiclink
  13. 2p5g picpicxrefxrefxrefxref
    automatically matched to d1clqa1
    complexed with 3dr; mutant
    1. region c:1-375 [149244] picpiclink
  14. 2p5g picpicxrefxrefxrefxref
    automatically matched to d1clqa1
    complexed with 3dr; mutant
    1. region d:2-375 [149246] picpiclink
  15. 1q9y picpicxref
    complexed with 8og, ca, dcp, doc; mutant
    1. region a:1-375 [96336] picpiclink
  16. 1q9x picpicxref
    complexed with 3dr, ca, dgp, doc; mutant
    1. region a:1-375 [96328] picpiclink
    2. region b:1-375 [96330] picpiclink
    3. region c:1-375 [96332] picpiclink
    4. region d:1-375 [96334] picpiclink
  17. 2p5o picpicxrefxrefxrefxref
    automatically matched to d1clqa1
    complexed with 3dr; mutant
    1. region a:1-375 [139498] picpiclink
  18. 2p5o picpicxrefxrefxrefxref
    automatically matched to d1clqa1
    complexed with 3dr; mutant
    1. region b:1-375 [139500] picpiclink
  19. 2p5o picpicxrefxrefxrefxref
    automatically matched to d1clqa1
    complexed with 3dr; mutant
    1. region c:1-375 [139502] picpiclink
  20. 2p5o picpicxrefxrefxrefxref
    automatically matched to d1clqa1
    complexed with 3dr; mutant
    1. region d:1-375 [139504] picpiclink
  21. 2oyq picpicxrefxrefxrefxref
    automatically matched to d1clqa1
    complexed with 3dr, mg, n5i, n5p; mutant
    1. region a:1-375 [149070] picpiclink
  22. 2oyq picpicxrefxrefxrefxref
    automatically matched to d1clqa1
    complexed with 3dr, mg, n5i, n5p; mutant
    1. region b:1-375 [149072] picpiclink
  23. 2oyq picpicxrefxrefxrefxref
    automatically matched to d1clqa1
    complexed with 3dr, mg, n5i, n5p; mutant
    1. region c:1-375 [149074] picpiclink
  24. 2oyq picpicxrefxrefxrefxref
    automatically matched to d1clqa1
    complexed with 3dr, mg, n5i, n5p; mutant
    1. region d:2-375 [149076] picpiclink
  25. 1waj picpicxref
    complexed with 5gp
    1. region a:1-375 [33718] picpiclink
  26. 1waf picpicxref
    complexed with gmp
    1. region a:1-375 [33719] picpiclink
    2. region b:1-375 [33720] picpiclink
  27. 2atq picpicxrefxref
    automatically matched to d1clqa1
    complexed with gdp, zn; mutant
    1. region a:1-375 [127303] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk