Structural Classification of Proteins
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Protein: Family B DNA polymerase from Bacteriophage RB69 [TaxId: 12353]

Lineage:

  1. Root: scop
  2. Class: Multi-domain proteins (alpha and beta) [56572]
    Folds consisting of two or more domains belonging to different classes
  3. Fold: DNA/RNA polymerases [56671]
    divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
  4. Superfamily: DNA/RNA polymerases [56672]
    "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
    link to SUPERFAMILY database - Superfamily
  5. Family: DNA polymerase I [56673]
  6. Protein: Family B DNA polymerase [56680]
  7. Species: Bacteriophage RB69 [TaxId: 12353] [56681]

PDB Entry Domains:

  1. 1ih7 picpicxref
    complexed with gmp, k
    1. region a:376-903 [62376] picpiclink
  2. 3cq8 picpicxref
    automatically matched to d1clqa2
    complexed with ca, gol, na, ttp; mutant
    1. region a:376-902 [156928] picpiclink
  3. 1ig9 picpicxref
    complexed with ca, doc, ttp; mutant
    1. region a:376-901 [62368] picpiclink
  4. 2dy4 picpicxrefxrefxrefxref
    automatically matched to d1clqa2
    complexed with ctg; mutant
    1. region a:376-902 [131883] picpiclink
  5. 2dy4 picpicxrefxrefxrefxref
    automatically matched to d1clqa2
    complexed with ctg; mutant
    1. region b:376-902 [131885] picpiclink
  6. 2dy4 picpicxrefxrefxrefxref
    automatically matched to d1clqa2
    complexed with ctg; mutant
    1. region c:376-900 [131887] picpiclink
  7. 2dy4 picpicxrefxrefxrefxref
    automatically matched to d1clqa2
    complexed with ctg; mutant
    1. region d:376-897 [131889] picpiclink
  8. 2ozm picpicxref
    automatically matched to d1clqa2
    complexed with 3dr, ddg, mg, n5p; mutant
    1. region a:376-903 [149116] picpiclink
  9. 1clq picpicxref
    1. region a:376-903 [43006] picpiclink
  10. 2ozs picpicxref
    automatically matched to d1clqa2
    complexed with ddg, dtp, mg; mutant
    1. region a:376-903 [149128] picpiclink
  11. 2p5g picpicxrefxrefxrefxref
    automatically matched to d1clqa2
    complexed with 3dr; mutant
    1. region a:376-903 [149241] picpiclink
  12. 2p5g picpicxrefxrefxrefxref
    automatically matched to d1clqa2
    complexed with 3dr; mutant
    1. region b:376-899 [149243] picpiclink
  13. 2p5g picpicxrefxrefxrefxref
    automatically matched to d1clqa2
    complexed with 3dr; mutant
    1. region c:376-898 [149245] picpiclink
  14. 2p5g picpicxrefxrefxrefxref
    automatically matched to d1clqa2
    complexed with 3dr; mutant
    1. region d:376-899 [149247] picpiclink
  15. 1q9y picpicxref
    complexed with 8og, ca, dcp, doc; mutant
    1. region a:376-902 [96337] picpiclink
  16. 1q9x picpicxref
    complexed with 3dr, ca, dgp, doc; mutant
    1. region a:376-903 [96329] picpiclink
    2. region b:376-903 [96331] picpiclink
    3. region c:376-903 [96333] picpiclink
    4. region d:376-903 [96335] picpiclink
  17. 2p5o picpicxrefxrefxrefxref
    automatically matched to d1clqa2
    complexed with 3dr; mutant
    1. region a:376-902 [139499] picpiclink
  18. 2p5o picpicxrefxrefxrefxref
    automatically matched to d1clqa2
    complexed with 3dr; mutant
    1. region b:376-901 [139501] picpiclink
  19. 2p5o picpicxrefxrefxrefxref
    automatically matched to d1clqa2
    complexed with 3dr; mutant
    1. region c:376-898 [139503] picpiclink
  20. 2p5o picpicxrefxrefxrefxref
    automatically matched to d1clqa2
    complexed with 3dr; mutant
    1. region d:376-896 [139505] picpiclink
  21. 2oyq picpicxrefxrefxrefxref
    automatically matched to d1clqa2
    complexed with 3dr, mg, n5i, n5p; mutant
    1. region a:376-903 [149071] picpiclink
  22. 2oyq picpicxrefxrefxrefxref
    automatically matched to d1clqa2
    complexed with 3dr, mg, n5i, n5p; mutant
    1. region b:376-899 [149073] picpiclink
  23. 2oyq picpicxrefxrefxrefxref
    automatically matched to d1clqa2
    complexed with 3dr, mg, n5i, n5p; mutant
    1. region c:376-900 [149075] picpiclink
  24. 2oyq picpicxrefxrefxrefxref
    automatically matched to d1clqa2
    complexed with 3dr, mg, n5i, n5p; mutant
    1. region d:376-898 [149077] picpiclink
  25. 1waj picpicxref
    complexed with 5gp
    1. region a:376-903 [43007] picpiclink
  26. 1waf picpicxref
    complexed with gmp
    1. region a:376-903 [43008] picpiclink
    2. region b:376-903 [43009] picpiclink
  27. 2atq picpicxrefxref
    automatically matched to d1clqa2
    complexed with gdp, zn; mutant
    1. region a:376-903 [127304] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk