Structural Classification of Proteins
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Protein: Exonuclease domain of prokaryotic DNA polymerase from Thermus aquaticus [TaxId: 271]

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Ribonuclease H-like motif [53066]
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. Superfamily: Ribonuclease H-like [53098]
    consists of one domain of this fold
    link to SUPERFAMILY database - Superfamily
  5. Family: DnaQ-like 3'-5' exonuclease [53118]
    contains Pfam 00929
  6. Protein: Exonuclease domain of prokaryotic DNA polymerase [53119]
    part of Klenow fragment, KF
  7. Species: Thermus aquaticus [TaxId: 271] [53121]

PDB Entry Domains:

  1. 1qtm picpicxref
    protein/DNA complex; complexed with 2dt, mg, ttp
    1. region a:293-422 [33695] picpiclink
  2. 1qsy picpicxref
    protein/DNA complex; complexed with 2da, dad, mg; mutant
    1. region a:293-422 [33700] picpiclink
  3. 1cmw picpicxrefxrefxref
    1. region a:290-422 [33701] picpiclink
  4. 1qss picpicxref
    protein/DNA complex; complexed with ddg, dg3, mg; mutant
    1. region a:293-422 [33697] picpiclink
  5. 1jxe picpicxref
    1. region a:293-422 [33705] picpiclink
  6. 3ktq picpicxref
    complexed with ctp, ddc, mg
    1. region a:293-422 [33696] picpiclink
  7. 1bgx picpicxrefxrefxrefxrefxrefxrefxref
    1. region t:290-422 [33699] picpiclink
  8. 1taq picpicxrefxrefxref
    complexed with bgl, zn; mutant
    1. region a:290-422 [33698] picpiclink
  9. 2ktq picpicxref
    complexed with ctp, ddc, mg
    1. region a:295-422 [33702] picpiclink
  10. 5ktq picpicxref
    complexed with ctp
    1. region a:290-422 [33704] picpiclink
  11. 1ktq picpicxref
    1. region a:290-422 [33703] picpiclink
  12. 4ktq picpicxref
    complexed with ddc
    1. region a:294-422 [33706] picpiclink
  13. 1tau picpicxrefxrefxref
    protein/DNA complex; complexed with bgl, zn
    1. region a:290-422 [33707] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk