Structural Classification of Proteins
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Protein: gp120 core from Human immunodeficiency virus type 1 [TaxId: 11676]

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: gp120 core [56501]
    unusual fold
  4. Superfamily: gp120 core [56502]
    link to SUPERFAMILY database - Superfamily
  5. Family: gp120 core [56503]
  6. Protein: gp120 core [56504]
  7. Species: Human immunodeficiency virus type 1 [TaxId: 11676] [56505]

PDB Entry Domains:

  1. 2ny2 picpicxrefxrefxrefxrefxrefxref
    complexed with edo, hez, nag, suc; mutant
    1. region a:83-491 [145704] picpiclink
  2. 2nxy picpicxrefxrefxrefxrefxrefxref
    complexed with hez, nag, trs; mutant
    1. region a:83-491 [145701] picpiclink
  3. 2ny4 picpicxrefxrefxrefxrefxrefxref
    complexed with hez, nag, suc; mutant
    1. region a:83-491 [145706] picpiclink
  4. 2ny3 picpicxrefxrefxrefxrefxrefxref
    complexed with nag, suc; mutant
    1. region a:83-491 [145705] picpiclink
  5. 2nxz picpicxrefxrefxrefxrefxrefxref
    complexed with edo, hez, ipa, nag, suc; mutant
    1. region a:83-491 [145702] picpiclink
  6. 2ny1 picpicxrefxrefxrefxrefxrefxref
    complexed with nag, suc; mutant
    1. region a:83-492 [145703] picpiclink
  7. 2ny0 picpicxrefxrefxrefxrefxrefxref
    complexed with hez, nag; mutant
    1. region a:83-491 [138757] picpiclink
  8. 1yym picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1g9ng_
    complexed with edo, ipa, mpt, nag, ndg, vlm; mutant
    1. region g:86-492 [124232] picpiclink
  9. 1yym picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1g9ng_
    complexed with edo, ipa, mpt, nag, ndg, vlm; mutant
    1. region p:1086-1492 [124237] picpiclink
  10. 2i5y picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1g9ng_
    complexed with bif, mpt, nag, ndg, vlm
    1. region g:86-492 [137071] picpiclink
  11. 2i5y picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1g9ng_
    complexed with bif, mpt, nag, ndg, vlm
    1. region p:86-492 [137076] picpiclink
  12. 2ny7 picpicxrefxrefxrefxref
    automatically matched to 2NY5 G:83-491
    complexed with nag; mutant
    1. region g:83-491 [145709] picpiclink
  13. 2i60 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1g9ng_
    complexed with ipa, mpt, nag, ndg, vlm
    1. region g:86-492 [137081] picpiclink
  14. 2i60 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1g9ng_
    complexed with ipa, mpt, nag, ndg, vlm
    1. region p:86-492 [137086] picpiclink
  15. 2ny5 picpicxrefxrefxrefxrefxrefxref
    complexed with nag, suc; mutant
    1. region g:83-491 [145707] picpiclink
  16. 1g9m picpicxrefxrefxrefxrefxrefxref
    complexed with fuc, ioh, nag; mutant
    1. chain g [42492] picpiclink
  17. 1rzj picpicxrefxrefxrefxrefxrefxref
    complexed with fuc, ioh, nag; mutant
    1. chain g [98200] picpiclink
  18. 1yyl picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1g9ng_
    complexed with bif, mpt, nag, ndg, vlm; mutant
    1. region g:86-492 [124222] picpiclink
  19. 1yyl picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1g9ng_
    complexed with bif, mpt, nag, ndg, vlm; mutant
    1. region p:1086-1492 [124227] picpiclink
  20. 1gc1 picpicxrefxrefxrefxrefxrefxref
    complexed with fuc, nag; mutant
    1. chain g [42493] picpiclink
  21. 2ny6 picpicxrefxrefxrefxrefxrefxref
    complexed with nag, suc; mutant
    1. region a:83-491 [145708] picpiclink
  22. 1rzk picpicxrefxrefxrefxrefxrefxref
    complexed with nag; mutant
    1. chain g [98207] picpiclink
  23. 1g9n picpicxrefxrefxrefxrefxrefxref
    complexed with nag; mutant
    1. chain g [42494] picpiclink
  24. 2b4c picpicxrefxrefxrefxrefxrefxref
    complexed with fuc, nag, ndg, so4, xyl; mutant
    1. region g:84-492 [144950] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk