Structural Classification of Proteins

Family: Cold shock DNA-binding domain-like

: barrel, closed; n=5, S=8

Lineage:

Root: scop
Class: All beta proteins [48724]
Fold: OB-fold [50198]
barrel, closed or partly opened n=5, S=10 or S=8; greek-key
Superfamily: Nucleic acid-binding proteins [50249]
uperfamily
Family: Cold shock DNA-binding domain-like [50282]
barrel, closed; n=5, S=8

Protein Domains:

Major cold shock protein [50283]
1. Escherichia coli [TaxId: 562] [50284] (2)
  1. 1mjc
    1. chain a [25319]
  2. 3mef
    1. chain a [25320]
2. Bacillus subtilis [TaxId: 1423] [50285] (6)
  1. 2es2
    automatically matched to d1csp__
    complexed with ca
    1. region a:1-67 [132309]
  2. 1csp
    1. chain a [25321]
  3. 1csq
    1. chain a [25322]
  4. 2f52
    automatically matched to d1csp__
    1. region a:1-67 [132965]
  5. 1nmf
    1. chain a [25323]
  6. 1nmg
    1. chain a [25324]
3. Bacillus caldolyticus [TaxId: 1394] [50286] (8)
  1. 1c9o
    complexed with na, trs
    1. chain a [25325]
    2. chain b [25326]
  2. 1hzc
    complexed with na; mutant
    1. chain a [65967]
    2. chain b [65968]
  3. 2hax
    automatically matched to d1c9oa_
    complexed with ca, mpd
    1. region a:1-66 [136301]
  4. 2hax
    automatically matched to d1c9oa_
    complexed with ca, mpd
    1. region b:1-66 [136302]
  5. 1hzb
    complexed with na; mutant
    1. chain a [65965]
    2. chain b [65966]
  6. 1i5f
    complexed with na; mutant
    1. chain a [66034]
    2. chain b [66035]
  7. 1hza
    mutant
    1. chain a [65963]
    2. chain b [65964]
  8. 1hz9
    mutant
    1. chain a [65961]
    2. chain b [65962]
4. Thermotoga maritima [TaxId: 2336] [69262] (1)
  1. 1g6p
    1. chain a [65168]
Y-box protein 1 cold shock domain (YB1-CSD) [69263]
1. Human (Homo sapiens) [TaxId: 9606] [69264] (1)
  1. 1h95
    1. chain a [65742]
S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase [50287]
1. Escherichia coli [TaxId: 562] [50288] (1)
  1. 1sro
    CASP2
    1. chain a [25327]
2. Streptomyces antibioticus [TaxId: 1890] [50289] (1)
  1. 1e3p
    partly disordered
    complexed with so4, wo4
    1. region a:656-717 [25328]
S1 domain of NusA [69265]
1. Thermotoga maritima [TaxId: 2336] [69266] (2)
  1. 1hh2
    1. region p:127-198 [65835]
  2. 1l2f
    1. region a:127-198 [91044]
2. Mycobacterium tuberculosis [TaxId: 1773] [69267] (4)
  1. 2asb
    automatically matched to d1k0ra1
    1. region a:108-183 [127244]
  2. 1k0r
    complexed with so4
    1. region a:108-183 [67961]
    2. region b:108-183 [67965]
  3. 2atw
    automatically matched to d1k0ra1
    1. region a:108-183 [127309]
  4. 2atw
    automatically matched to d1k0ra1
    1. region c:108-183 [127312]
C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) [88670]
1. Archaeon Methanococcus jannaschii [TaxId: 2190] [88671] (1)
  1. 1go3
    1. region e:79-184 [83054]
    2. region m:79-181 [83056]
2. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [117195] (7)
  SQ P34087
  1. 1y14
    1. region b:81-171 [116323]
    2. region d:81-171 [116326]
  2. 2ja7
    automatically matched to d1y14b1
    complexed with bru, mg, tt, zn
    1. region g:81-171 [138198]
  3. 2ja7
    automatically matched to d1y14b1
    complexed with bru, mg, tt, zn
    1. region s:81-171 [138214]
  4. 2ja5
    automatically matched to d1y14b1
    complexed with bru, mg, zn
    1. region g:81-171 [138166]
  5. 2ja8
    automatically matched to d1y14b1
    complexed with bru, mg, tt, zn
    1. region g:81-171 [138230]
  6. 2b8k
    automatically matched to d1y14b1
    complexed with zn
    1. region g:81-171 [128084]
  7. 2ja6
    automatically matched to d1y14b1
    complexed with bru, mg, tt, zn
    1. region g:81-171 [138182]
3. Human (Homo sapiens) [TaxId: 9606] [141309] (4)
  SQ P62487 78-171
  1. 2c35
    1. region b:78-171 [129712]
  2. 2c35
    automatically matched to 2C35 B:78-171
    1. region d:78-171 [129715]
  3. 2c35
    automatically matched to 2C35 B:78-171
    1. region f:78-171 [129718]
  4. 2c35
    automatically matched to 2C35 B:78-171
    1. region h:78-171 [129721]
Translational initiation factor 1, IF1 [50290]
1. Escherichia coli [TaxId: 562] [50291] (3)
  1. 1hr0
    complexed with mg, zn
    1. chain w [25329]
  2. 1ah9
    1. chain a [25330]
  3. 1zo1
    automatically matched to d1hr0w_
    1. region w:1-71 [125417]
Archaeal initiation factor-1a, aIF1a [63772]
evolutionary link between IF1 and eIF1a
1. Archaeon Methanococcus jannaschii [TaxId: 2190] [63773] (1)
  1. 1jt8
    1. chain a [63279]
Translation initiation factor-1a, eIF1a [50292]
1. Human (Homo sapiens) [TaxId: 9606] [50293] (1)
  1. 1d7q
    1. chain a [25331]
Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain [74950]
1. Human (Homo sapiens) [TaxId: 9606] [74951] (2)
  SQ P05198
  1. 1kl9
    complexed with mse, zn
    1. region a:3-88 [111575]
  2. 1q8k
    1. region a:3-88 [111597]
2. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [101764] (1)
  1. 1q46
    1. region a:2-88 [111595]
3. Sulfolobus solfataricus [TaxId: 2287] [141310] (1)
  SQ Q97Z79 1-84
  1. 2aho
    complexed with gnp, mg, zn
    1. region b:1-84 [126771]
Viral structural mimic of eIF2alpha [74952]
1. Vaccinia virus [TaxId: 10245] [74953] (1)
  1. 1luz
    complexed with mse
    1. chain a [74271]
    2. chain b [74272]
2. Myxoma virus, m156r [TaxId: 10273] [74954] (1)
  1. 1jjg
    1. chain a [71696]
Rho termination factor, RNA-binding domain [68910]
1. Escherichia coli [TaxId: 562] [68911] (14)
  SQ P03002
  1. 1a62
    1. region a:48-125 [64709]
  2. 1a8v
    complexed with cu
    1. region a:48-118 [64713]
    2. region b:48-118 [64715]
  3. 2a8v
    protein/RNA complex
    1. region a:48-118 [64753]
    2. region b:48-118 [64755]
    3. region c:48-118 [64757]
  4. 1xpu
    complexed with ags, fpd, mg
    1. region a:48-126 [115791]
    2. region b:48-126 [115794]
    3. region c:48-126 [115797]
    4. region d:48-126 [115800]
    5. region e:48-126 [115803]
    6. region f:48-126 [115806]
  5. 1xpr
    complexed with ags, fb, mg
    1. region a:48-126 [115773]
    2. region b:48-126 [115776]
    3. region c:48-126 [115779]
    4. region d:48-126 [115782]
    5. region e:48-126 [115785]
    6. region f:48-126 [115788]
  6. 1pvo
    complexed with anp
    1. region a:48-126 [88317]
    2. region b:51-126 [88319]
    3. region c:48-126 [88322]
    4. region d:48-126 [88325]
    5. region e:48-126 [88328]
    6. region f:48-126 [88331]
  7. 1pv4
    complexed with mse
    1. region a:48-126 [88296]
    2. region b:51-126 [88298]
    3. region c:48-126 [88301]
    4. region d:48-126 [88304]
    5. region e:48-126 [88307]
    6. region f:48-126 [88310]
  8. 1xpo
    automatically matched to d1a63_2
    complexed with ags, bcm, mg
    1. region a:48-129 [122213]
  9. 1xpo
    automatically matched to d1a63_2
    complexed with ags, bcm, mg
    1. region b:48-129 [122216]
  10. 1xpo
    automatically matched to d1a63_2
    complexed with ags, bcm, mg
    1. region c:48-129 [122219]
  11. 1xpo
    automatically matched to d1a63_2
    complexed with ags, bcm, mg
    1. region d:48-129 [122222]
  12. 1xpo
    automatically matched to d1a63_2
    complexed with ags, bcm, mg
    1. region e:48-129 [122225]
  13. 1xpo
    automatically matched to d1a63_2
    complexed with ags, bcm, mg
    1. region f:48-129 [122228]
  14. 1a63
    1. region a:48-130 [64711]
C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) [50296]
1. Archaeon Methanococcus jannaschii [TaxId: 2190] [50297] (2)
  1. 2eif
    1. region a:74-132 [25339]
  2. 1eif
    1. region a:74-133 [25340]
2. Archaeon Pyrobaculum aerophilum [TaxId: 13773] [50298] (1)
  1. 1bkb
    CASP3
    mutant
    1. region a:75-139 [25341]
3. Archaeon Pyrococcus horikoshii [TaxId: 53953] [82104] (1)
  1. 1iz6
    1. region a:71-137 [76977]
    2. region b:71-137 [76979]
    3. region c:71-136 [76981]
4. Leishmania infantum [TaxId: 5671] [110195] (1)
  SQ Q9N9V6
  1. 1x6o
    Structural genomics target
    complexed with peg
    1. region a:87-165 [109494]
5. Leishmania mexicana [TaxId: 5665] [117196] (1)
  SQ Q9N9V6 97% sequence identity
  1. 1xtd
    1. region a:95-172 [116016]
C-terminal domain of eIF5a homologue (Hex1) [82105]
1. Filamentous fungi (Neurospora crassa) [TaxId: 5141] [82106] (1)
  1. 1khi
    1. region a:103-173 [77409]
N-terminal domain of ribosomal protein L2 [50299]
incomplete OB-fold lacking the last strand
1. Bacillus stearothermophilus [TaxId: 1422] [50300] (2)
  1. 1rl2
    mutant
    1. region a:60-125 [25342]
    2. region b:60-125 [25343]
  2. 1yl3
    automatically matched to d1rl2a2
    1. region d:60-125 [123576]
2. Archaeon Haloarcula marismortui [TaxId: 2238] [50301] (40)
  SQ P20276
  includes the N-terminal tail
  1. 1vqo
    automatically matched to d1s72a2
    complexed with 1ma, cd, cl, k, mg, na, omg, omu, ppu, psu, sr, ur3
    1. region a:1-90 [120362]
  2. 1vq8
    automatically matched to d1s72a2
    complexed with 1ma, aca, cd, cl, k, mg, na, omg, omu, psu, sps, sr, ur3
    1. region a:1-90 [120188]
  3. 1vqp
    automatically matched to d1s72a2
    complexed with 1ma, cd, cl, dcz, hfa, k, mg, na, omg, omu, po2, ppu, psu, sr, ur3
    1. region a:1-90 [120391]
  4. 1jj2
    complexed with cd, cl, k, mg, na
    1. region a:1-90 [63085]
  5. 1yhq
    automatically matched to d1s72a2
    complexed with 1ma, cd, cl, k, mg, na, omg, omu, psu, sr, ur3, zit; mutant
    1. region a:1-90 [123183]
  6. 1vql
    automatically matched to d1s72a2
    complexed with 1ma, cd, cl, k, mg, na, omg, omu, ppu, psu, sr, tse, ur3
    1. region a:1-90 [120275]
  7. 1vqk
    automatically matched to d1s72a2
    complexed with 1ma, aca, cd, cl, k, mg, na, omg, omu, psu, sr, ur3
    1. region a:1-90 [120246]
  8. 1s72
    complexed with 1ma, cd, cl, k, mg, na, omg, omu, psu, ur3
    1. region a:1-90 [105319]
  9. 1vqm
    automatically matched to d1s72a2
    complexed with 1ma, cd, cl, k, mg, na, omg, omu, po2, ppu, psu, sr, ur3
    1. region a:1-90 [120304]
  10. 1vqn
    automatically matched to d1s72a2
    complexed with 1ma, aca, btn, cd, cl, hfa, k, mg, na, omg, omu, ppu, psu, sr, ur3
    1. region a:1-90 [120333]
  11. 1yi2
    automatically matched to d1s72a2
    complexed with 1ma, cd, cl, ery, k, mg, na, omg, omu, psu, ur3; mutant
    1. region a:1-90 [123230]
  12. 1yij
    automatically matched to d1s72a2
    complexed with 1ma, cd, cl, k, mg, na, omg, omu, psu, tel, ur3; mutant
    1. region a:1-90 [123298]
  13. 1vq7
    automatically matched to d1s72a2
    complexed with 1ma, 2op, 5aa, cd, cl, k, mg, na, omg, omu, pae, psu, ur3
    1. region a:1-90 [120159]
  14. 1vq4
    automatically matched to d1s72a2
    complexed with 1ma, 2op, 5aa, cd, cl, k, mg, na, omg, omu, po2, psu, ur3
    1. region a:1-90 [120072]
  15. 2otl
    automatically matched to d1s72a2
    complexed with 1ma, cd, cl, gir, k, mg, na, omg, omu, psu, ur3
    1. region a:1-90 [139346]
  16. 1vq5
    automatically matched to d1s72a2
    complexed with 1ma, 2op, 5aa, cd, cl, dcz, k, mg, na, omg, omu, po2, psu, ur3
    1. region a:1-90 [120101]
  17. 1vq9
    automatically matched to d1s72a2
    complexed with 1ma, aca, cd, cl, k, mg, na, omg, omu, psu, sps, sr, ur3
    1. region a:1-90 [120217]
  18. 1m90
    complexed with aca, cd, cl, k, mg, na, pha, sps
    1. region c:1-90 [78840]
  19. 1yit
    automatically matched to d1s72a2
    complexed with 1ma, cd, cl, k, mg, na, omg, omu, psu, ur3, vir, vrs
    1. region a:1-90 [123341]
  20. 1vq6
    automatically matched to d1s72a2
    complexed with 1ma, 5aa, aca, btn, cd, cl, hfa, k, mg, na, omg, omu, psu, ur3
    1. region a:1-90 [120130]
  21. 2otj
    automatically matched to d1s72a2
    complexed with 13t, 1ma, cd, cl, k, mg, na, omg, omu, psu, ur3
    1. region a:1-90 [139317]
  22. 1yjw
    automatically matched to d1s72a2
    complexed with 1ma, cd, cl, k, mg, na, omg, omu, psu, syb, ur3; mutant
    1. region a:1-90 [123465]
  23. 1nji
    complexed with cd, cl, clm, k, mg, na; mutant
    1. region c:1-90 [85793]
  24. 1kqs
    complexed with aca, btn, cd, cl, k, mg, na, pha, ppu
    1. region a:1-90 [68815]
  25. 1kc8
    complexed with bls, cd, cl, k, mg, na
    1. region c:1-90 [84357]
  26. 1yjn
    automatically matched to d1s72a2
    complexed with 1ma, cd, cl, cly, k, mg, na, omg, omu, psu, ur3; mutant
    1. region a:1-90 [123433]
  27. 1n8r
    complexed with cd, cl, k, mg, na, vir; mutant
    1. region c:1-90 [85429]
  28. 1k73
    complexed with anm, cd, cl, k, mg, na
    1. region c:1-90 [84318]
  29. 1yj9
    automatically matched to d1s72a2
    complexed with 1ma, cd, cl, k, mg, na, omg, omu, psu, ur3; mutant
    1. region a:1-90 [123394]
  30. 1qvg
    complexed with cd, cl, k, mg, na
    1. region a:1-90 [96392]
  31. 1q82
    complexed with cd, cl, k, mg, na, ppu
    1. region c:1-90 [96129]
  32. 1qvf
    complexed with cd, cl, k, mg, na
    1. region a:1-90 [96362]
  33. 1q81
    complexed with cd, cl, k, mg, na, ppu
    1. region c:1-90 [96099]
  34. 1k9m
    complexed with cd, cl, k, mg, na, tyk
    1. region c:1-90 [72213]
  35. 1kd1
    complexed with cd, cl, k, mg, na, spr
    1. region c:1-90 [72324]
  36. 1k8a
    complexed with cai, cd, cl, k, mg, na
    1. region c:1-90 [72146]
  37. 1m1k
    complexed with cd, cl, k, mg, na, zit
    1. region c:1-90 [74384]
  38. 1q86
    complexed with cd, cl, k, mg, na, pha
    1. region c:1-90 [96167]
  39. 1q7y
    complexed with cd, cl, k, mg, na, po4, puy
    1. region c:1-90 [96065]
  40. 1ffk
    CA-atoms only
    complexed with cd, k, mo3; mutant
    1. region a:1-90 [25344]
3. Thermus thermophilus [TaxId: 274] [159084] (5)
  SQ Q72I07 1-125
  1. 2j01
    Representative structure
    1. region d:2-126 [145565]
  2. 2j03
    automatically matched to 2J01 D:2-126
    complexed with lys
    1. region d:2-126 [145592]
  3. 2hgq
    automatically matched to 2J01 D:2-126
    1. region d:5-126 [145338]
  4. 2hgj
    automatically matched to 2J01 D:2-126
    1. region d:5-126 [145306]
  5. 2hgu
    automatically matched to 2J01 D:2-126
    1. region d:5-126 [145370]
4. Deinococcus radiodurans [TaxId: 1299] [159085] (5)
  SQ Q9RXJ9 33-127
  1. 2zjr
    Representative structure
    complexed with mg
    1. region a:33-127 [154554]
  2. 1xbp
    automatically matched to 2ZJR A:33-127
    complexed with mul
    1. region a:33-127 [145866]
  3. 2zjq
    automatically matched to 2ZJR A:33-127
    1. region a:33-127 [154523]
  4. 3cf5
    automatically matched to 2ZJR A:33-127
    complexed with mg, txx
    1. region a:33-127 [156539]
  5. 2zjp
    automatically matched to 2ZJR A:33-127
    complexed with mg, nsh, zn
    1. region a:33-127 [154491]
5. Escherichia coli [TaxId: 562] [159086] (27)
  SQ P60422 3-124
  1. 2qam
    automatically matched to 2AW4 C:61-124
    complexed with mg, nmy, zn
    1. region c:61-124 [150240]
  2. 2qao
    automatically matched to 2AW4 C:61-124
    complexed with mg, nmy, zn
    1. region c:61-124 [150293]
  3. 2i2t
    automatically matched to 2AW4 C:61-124
    complexed with mg, zn
    1. region c:61-124 [145442]
  4. 2i2v
    automatically matched to 2AW4 C:61-124
    complexed with mg, zn
    1. region c:61-124 [145484]
  5. 2qbe
    automatically matched to 2AW4 C:61-124
    complexed with mg, zn
    1. region c:61-124 [150460]
  6. 2qbg
    automatically matched to 2AW4 C:61-124
    complexed with mg, zn
    1. region c:61-124 [150514]
  7. 2qoz
    automatically matched to 2AW4 C:61-124
    complexed with mg, nmy, zn
    1. region c:61-124 [151116]
  8. 2qp1
    automatically matched to 2AW4 C:61-124
    complexed with mg, nmy, zn
    1. region c:61-124 [151169]
  9. 3df2
    automatically matched to 2AW4 C:61-124
    complexed with mg, zn
    1. region c:61-124 [157629]
  10. 3df4
    automatically matched to 2AW4 C:61-124
    complexed with mg, zn
    1. region c:61-124 [157683]
  11. 2qba
    automatically matched to 2AW4 C:61-124
    complexed with lll, mg, zn
    1. region c:61-124 [150353]
  12. 2qbc
    automatically matched to 2AW4 C:61-124
    complexed with lll, mg, zn
    1. region c:61-124 [150406]
  13. 2qbi
    automatically matched to 2AW4 C:61-124
    complexed with lll, mg, zn
    1. region c:61-124 [150568]
  14. 2qbk
    automatically matched to 2AW4 C:61-124
    complexed with lll, mg, zn
    1. region c:61-124 [150622]
  15. 2qov
    automatically matched to 2AW4 C:61-124
    complexed with mg, zn
    1. region c:61-124 [151010]
  16. 2qox
    automatically matched to 2AW4 C:61-124
    complexed with mg, zn
    1. region c:61-124 [151063]
  17. 1vs6
    automatically matched to 2AW4 C:61-124
    complexed with mg
    1. region c:61-124 [144457]
  18. 1vs8
    automatically matched to 2AW4 C:61-124
    complexed with mg
    1. region c:61-124 [144498]
  19. 2aw4
    Representative structure
    complexed with mg
    1. region c:61-124 [144866]
  20. 2awb
    automatically matched to 2AW4 C:61-124
    complexed with mg
    1. region c:61-124 [144907]
  21. 2z4l
    automatically matched to 2AW4 C:61-124
    complexed with mg, par, zn
    1. region c:61-124 [154078]
  22. 2z4n
    automatically matched to 2AW4 C:61-124
    complexed with mg, par, zn
    1. region c:61-124 [154132]
  23. 2vhm
    automatically matched to 2AW4 C:61-124
    complexed with mg; mutant
    1. region c:61-124 [153063]
  24. 2vhn
    automatically matched to 2AW4 C:61-124
    complexed with mg
    1. region c:61-124 [153095]
  25. 2rdo
    automatically matched to 2AW4 C:61-124
    1. region c:61-124 [151940]
  26. 2j28
    automatically matched to 2AW4 C:61-124
    complexed with mg
    1. region c:61-124 [145623]
  27. 3bbx
    automatically matched to 2AW4 C:61-124
    complexed with mg
    1. region c:61-124 [155099]
Ribosomal protein S12 [50302]
1. Thermus thermophilus [TaxId: 274] [50303] (36)
  SQ P17293
  1. 2uub
    automatically matched to d1i94l_
    complexed with 6mz, cm0, k, mg, par, zn
    1. region l:5-122 [139943]
  2. 1fjg
    complexed with mg, par, scm, sry, zn
    1. chain l [25346]
  3. 1j5e
    complexed with unx, zn
    1. chain l [71555]
  4. 2uxc
    automatically matched to d1i94l_
    complexed with k, mg, par, zn
    1. region l:5-122 [140015]
  5. 2uuc
    automatically matched to d1i94l_
    complexed with 6mz, cm0, k, mg, par, zn
    1. region l:5-122 [139963]
  6. 2uua
    automatically matched to d1i94l_
    complexed with 6mz, cm0, k, mg, par, zn
    1. region l:5-122 [139923]
  7. 1xmq
    complexed with mg, par, t6a, zn
    1. chain l [115541]
  8. 1n32
    complexed with mg, par, psu, zn
    1. chain l [79881]
  9. 2uu9
    automatically matched to d1i94l_
    complexed with 6mz, cm0, k, mg, par, zn
    1. region l:5-122 [139903]
  10. 1xnq
    complexed with mg, par, zn
    1. chain l [115615]
  11. 1xnr
    complexed with mg, par, zn
    1. chain l [115637]
  12. 1hr0
    complexed with mg, zn
    1. chain l [25347]
  13. 1hnz
    complexed with hyg, mg, zn
    1. chain l [25348]
  14. 2j02
    automatically matched to d1i94l_
    complexed with 5mu, mg, par, zn
    1. region l:5-122 [137877]
  15. 2j00
    automatically matched to d1i94l_
    complexed with 5mu, mg, par, zn
    1. region l:5-122 [137850]
  16. 1xmo
    complexed with mg, mnu, par, t6a, zn
    1. chain l [115511]
  17. 1hnw
    complexed with mg, tac, zn
    1. chain l [25349]
  18. 2e5l
    automatically matched to d1i94l_
    complexed with zn
    1. region l:5-122 [132036]
  19. 1i94
    complexed with mg, wo2, zn
    1. chain l [62003]
  20. 1hnx
    complexed with mg, pcy, zn
    1. chain l [25350]
  21. 1n33
    complexed with mg, par, psu, zn
    1. chain l [79903]
  22. 2hhh
    automatically matched to d1i94l_
    complexed with ksg
    1. region l:5-122 [136488]
  23. 1i96
    complexed with mg, wo2, zn
    1. chain l [62047]
  24. 1n34
    complexed with zn
    1. chain l [79925]
  25. 1i97
    complexed with mg, tac, wo2, zn
    1. chain l [62070]
  26. 1n36
    complexed with zn
    1. chain l [79948]
  27. 1i95
    complexed with ede, mg, wo2, zn
    1. chain l [62025]
  28. 2f4v
    automatically matched to d1i94l_
    complexed with ab9, d2c, k, mg, zn
    1. region l:5-122 [132949]
  29. 2hgp
    automatically matched to d1i94l_
    1. region o:5-122 [136431]
  30. 2hgi
    automatically matched to d1i94l_
    1. region o:5-122 [136410]
  31. 2hgr
    automatically matched to d1i94l_
    1. region o:5-122 [136452]
  32. 2ow8
    automatically matched to d1i94l_
    complexed with 2mg, 4oc, 4su, 5mc, 5mu, 7mg, h2u, m2g, ma6, mia, psu, ur3
    1. region m:4-121 [139410]
  33. 1yl4
    automatically matched to d1i94l_
    1. region o:5-122 [123608]
  34. 2b64
    automatically matched to d1i94l_
    complexed with psu, yyg
    1. region l:5-122 [127944]
  35. 2b9o
    automatically matched to d1i94l_
    complexed with psu, yyg
    1. region l:5-122 [128174]
  36. 2b9m
    automatically matched to d1i94l_
    complexed with psu, yyg
    1. region l:5-122 [128137]
2. Escherichia coli [TaxId: 562] [159087] (25)
  SQ P0A7S3 1-123
  1. 2qal
    automatically matched to 2AVY L:1-123
    complexed with mg, nmy
    1. region l:1-123 [150225]
  2. 2qan
    automatically matched to 2AVY L:1-123
    complexed with mg, nmy
    1. region l:1-123 [150279]
  3. 2qbf
    automatically matched to 2AVY L:1-123
    complexed with mg
    1. region l:1-123 [150499]
  4. 2qbd
    automatically matched to 2AVY L:1-123
    complexed with mg
    1. region l:1-123 [150445]
  5. 1vs5
    automatically matched to 2AVY L:1-123
    complexed with ksg, mg
    1. region l:1-123 [144446]
  6. 3df1
    automatically matched to 2AVY L:1-123
    complexed with hyg, mg
    1. region l:1-123 [157614]
  7. 3df3
    automatically matched to 2AVY L:1-123
    complexed with hyg, mg
    1. region l:1-123 [157668]
  8. 1vs7
    automatically matched to 2AVY L:1-123
    complexed with ksg, mg
    1. region l:1-123 [144487]
  9. 2qoy
    automatically matched to 2AVY L:1-123
    complexed with mg, nmy, scm
    1. region l:1-123 [151102]
  10. 2qp0
    automatically matched to 2AVY L:1-123
    complexed with mg, nmy, scm
    1. region l:1-123 [151155]
  11. 2avy
    Representative structure
    complexed with mg
    1. region l:1-123 [144853]
  12. 2aw7
    automatically matched to 2AVY L:1-123
    complexed with mg
    1. region l:1-123 [144896]
  13. 2qb9
    automatically matched to 2AVY L:1-123
    complexed with lll, mg
    1. region l:1-123 [150339]
  14. 2qbb
    automatically matched to 2AVY L:1-123
    complexed with lll, mg
    1. region l:1-123 [150392]
  15. 2i2p
    automatically matched to 2AVY L:1-123
    complexed with mg
    1. region l:1-123 [145431]
  16. 2i2u
    automatically matched to 2AVY L:1-123
    complexed with mg
    1. region l:1-123 [145473]
  17. 2qbh
    automatically matched to 2AVY L:1-123
    complexed with lll, mg
    1. region l:1-123 [150553]
  18. 2qbj
    automatically matched to 2AVY L:1-123
    complexed with lll, mg
    1. region l:1-123 [150607]
  19. 2qou
    automatically matched to 2AVY L:1-123
    complexed with mg, scm
    1. region l:1-123 [150996]
  20. 2qow
    automatically matched to 2AVY L:1-123
    complexed with mg, scm
    1. region l:1-123 [151049]
  21. 2z4m
    automatically matched to 2AVY L:1-123
    complexed with mg, par
    1. region l:1-123 [154117]
  22. 2vho
    automatically matched to 2AVY L:1-123
    complexed with mg
    1. region l:1-123 [153134]
  23. 2z4k
    automatically matched to 2AVY L:1-123
    complexed with mg, par
    1. region l:1-123 [154063]
  24. 2vhp
    automatically matched to 2AVY L:1-123
    complexed with mg
    1. region l:1-123 [153156]
  25. 3deg
    automatically matched to 2AVY L:1-123
    complexed with 1ma, 2mg, 5mc, 5mu, 7mg, h2u, m2g, omc, omg, psu, yg
    1. region d:1-123 [157573]
Ribosomal protein S17 [50304]
1. Thermus thermophilus [TaxId: 274] [50305] (45)
  SQ P24321
  1. 2uub
    automatically matched to 2J00 Q:2-101
    complexed with 6mz, cm0, k, mg, par, zn
    1. region q:2-101 [139948]
  2. 2vqe
    automatically matched to d1fjgq_
    complexed with k, mg, par, tm2, zn
    1. region q:2-105 [153441]
  3. 1fjg
    complexed with mg, par, scm, sry, zn
    1. chain q [25352]
  4. 2vqf
    automatically matched to d1fjgq_
    complexed with k, mg, par, tm2, zn
    1. region q:2-105 [153460]
  5. 1j5e
    complexed with unx, zn
    1. chain q [71560]
  6. 2uxc
    automatically matched to d1fjgq_
    complexed with k, mg, par, zn
    1. region q:2-105 [140020]
  7. 2uuc
    automatically matched to 2J00 Q:2-101
    complexed with 6mz, cm0, k, mg, par, zn
    1. region q:2-101 [139968]
  8. 2uua
    automatically matched to 2J00 Q:2-101
    complexed with 6mz, cm0, k, mg, par, zn
    1. region q:2-101 [139928]
  9. 1xmq
    complexed with mg, par, t6a, zn
    1. chain q [115546]
  10. 1n32
    complexed with mg, par, psu, zn
    1. chain q [79886]
  11. 2uu9
    automatically matched to 2J00 Q:2-101
    complexed with 6mz, cm0, k, mg, par, zn
    1. region q:2-101 [139908]
  12. 1xnq
    complexed with mg, par, zn
    1. chain q [115620]
  13. 1xnr
    complexed with mg, par, zn
    1. chain q [115642]
  14. 1hr0
    complexed with mg, zn
    1. chain q [25353]
  15. 1hnz
    complexed with hyg, mg, zn
    1. chain q [25354]
  16. 2j02
    automatically matched to 2J00 Q:2-101
    complexed with 5mu, mg, par, zn
    1. region q:2-101 [137882]
  17. 2j00
    complexed with 5mu, mg, par, zn
    1. region q:2-101 [137855]
  18. 2uxd
    automatically matched to d1fjgq_
    complexed with k, mg, par, zn
    1. region q:2-105 [152297]
  19. 1xmo
    complexed with mg, mnu, par, t6a, zn
    1. chain q [115516]
  20. 1hnw
    complexed with mg, tac, zn
    1. chain q [25355]
  21. 2e5l
    automatically matched to d1fjgq_
    complexed with zn
    1. region q:2-105 [132041]
  22. 3d5a
    automatically matched to d1fjgq_
    complexed with mg, zn
    1. region q:2-100 [157350]
  23. 3d5c
    automatically matched to d1fjgq_
    complexed with mg, zn
    1. region q:2-100 [157380]
  24. 1i94
    complexed with mg, wo2, zn
    1. chain q [62008]
  25. 1hnx
    complexed with mg, pcy, zn
    1. chain q [25356]
  26. 1n33
    complexed with mg, par, psu, zn
    1. chain q [79908]
  27. 2hhh
    automatically matched to d1fjgq_
    complexed with ksg
    1. region q:2-105 [136493]
  28. 1i96
    complexed with mg, wo2, zn
    1. chain q [62052]
  29. 2uxb
    automatically matched to d1fjgq_
    complexed with k, mg, par, zn
    1. region q:2-105 [152278]
  30. 1n34
    complexed with zn
    1. chain q [79930]
  31. 2v46
    automatically matched to d2j00q1
    complexed with 5mu, mg, zn
    1. region q:2-101 [152499]
  32. 2v48
    automatically matched to d2j00q1
    complexed with 5mu, mg, zn
    1. region q:2-101 [152535]
  33. 1i97
    complexed with mg, tac, wo2, zn
    1. chain q [62075]
  34. 1n36
    complexed with zn
    1. chain q [79953]
  35. 1i95
    complexed with ede, mg, wo2, zn
    1. chain q [62030]
  36. 2f4v
    automatically matched to d1fjgq_
    complexed with ab9, d2c, k, mg, zn
    1. region q:2-105 [132954]
  37. 2qnh
    automatically matched to d1fjgq_
    complexed with 2mg, 5mc, 7mg, m2g, ma6, psu
    1. region r:2-105 [150941]
  38. 2hgp
    automatically matched to d1fjgq_
    1. region t:2-105 [136436]
  39. 2hgi
    automatically matched to d1fjgq_
    1. region t:2-105 [136415]
  40. 2hgr
    automatically matched to d1fjgq_
    1. region t:2-105 [136457]
  41. 2ow8
    automatically matched to d1fjgq_
    complexed with 2mg, 4oc, 4su, 5mc, 5mu, 7mg, h2u, m2g, ma6, mia, psu, ur3
    1. region r:2-105 [139415]
  42. 1yl4
    automatically matched to d1fjgq_
    1. region t:2-105 [123613]
  43. 2b64
    automatically matched to d1fjgq_
    complexed with psu, yyg
    1. region q:2-105 [127949]
  44. 2b9o
    automatically matched to d1fjgq_
    complexed with psu, yyg
    1. region q:2-105 [128179]
  45. 2b9m
    automatically matched to d1fjgq_
    complexed with psu, yyg
    1. region q:2-105 [128142]
2. Bacillus stearothermophilus [TaxId: 1422] [50306] (1)
  1. 1rip
    low-resolution NMR-structure
    1. chain a [25357]
3. Escherichia coli [TaxId: 562] [159088] (26)
  SQ P02373 3-82
  1. 2gy9
    automatically matched to 2AVY Q:3-82
    1. region q:5-82 [145237]
  2. 2gyb
    automatically matched to 2AVY Q:3-82
    1. region q:5-82 [145259]
  3. 2qal
    automatically matched to 2AVY Q:3-82
    complexed with mg, nmy
    1. region q:3-82 [150229]
  4. 2qan
    automatically matched to 2AVY Q:3-82
    complexed with mg, nmy
    1. region q:3-82 [150283]
  5. 2qbf
    automatically matched to 2AVY Q:3-82
    complexed with mg
    1. region q:3-82 [150503]
  6. 2qbd
    automatically matched to 2AVY Q:3-82
    complexed with mg
    1. region q:3-82 [150449]
  7. 1vs5
    automatically matched to 2AVY Q:3-82
    complexed with ksg, mg
    1. region q:3-82 [144451]
  8. 3df1
    automatically matched to 2AVY Q:3-82
    complexed with hyg, mg
    1. region q:3-82 [157619]
  9. 3df3
    automatically matched to 2AVY Q:3-82
    complexed with hyg, mg
    1. region q:3-82 [157673]
  10. 1vs7
    automatically matched to 2AVY Q:3-82
    complexed with ksg, mg
    1. region q:3-82 [144492]
  11. 2qoy
    automatically matched to 2AVY Q:3-82
    complexed with mg, nmy, scm
    1. region q:3-82 [151106]
  12. 2qp0
    automatically matched to 2AVY Q:3-82
    complexed with mg, nmy, scm
    1. region q:3-82 [151159]
  13. 2avy
    Representative structure
    complexed with mg
    1. region q:3-82 [144858]
  14. 2aw7
    automatically matched to 2AVY Q:3-82
    complexed with mg
    1. region q:3-82 [144901]
  15. 2qb9
    automatically matched to 2AVY Q:3-82
    complexed with lll, mg
    1. region q:3-82 [150343]
  16. 2qbb
    automatically matched to 2AVY Q:3-82
    complexed with lll, mg
    1. region q:3-82 [150396]
  17. 2i2p
    automatically matched to 2AVY Q:3-82
    complexed with mg
    1. region q:3-82 [145436]
  18. 2i2u
    automatically matched to 2AVY Q:3-82
    complexed with mg
    1. region q:3-82 [145478]
  19. 2qbh
    automatically matched to 2AVY Q:3-82
    complexed with lll, mg
    1. region q:3-82 [150557]
  20. 2qbj
    automatically matched to 2AVY Q:3-82
    complexed with lll, mg
    1. region q:3-82 [150611]
  21. 2qou
    automatically matched to 2AVY Q:3-82
    complexed with mg, scm
    1. region q:3-82 [151000]
  22. 2qow
    automatically matched to 2AVY Q:3-82
    complexed with mg, scm
    1. region q:3-82 [151053]
  23. 2z4m
    automatically matched to 2AVY Q:3-82
    complexed with mg, par
    1. region q:3-82 [154121]
  24. 2vho
    automatically matched to 2AVY Q:3-82
    complexed with mg
    1. region q:3-82 [153139]
  25. 2z4k
    automatically matched to 2AVY Q:3-82
    complexed with mg, par
    1. region q:3-82 [154067]
  26. 2vhp
    automatically matched to 2AVY Q:3-82
    complexed with mg
    1. region q:3-82 [153161]
Ribosomal protein S28e [101765]
incomplete OB-fold lacking the last strand
1. Archaeon Pyrococcus horikoshii [TaxId: 53953] [101766] (1)
  1. 1ny4
    structural genomics; NESG target JR19
    1. chain a [92316]
2. Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262] [101767] (1)
  1. 1ne3
    structural genomics
    1. chain a [91828]
Elongation factor P middle and C-terminal domains [110196]
duplication: contains two domains of this fold
1. Thermus thermophilus HB8 [TaxId: 300852] [110197] (1)
  SQ Q76G20
  1. 1ueb
    1. region a:64-126 [107783]
    2. region a:127-184 [107784]
    3. region b:264-326 [107786]
    4. region b:327-384 [107787]
S1-domain of Ribonuclease E [110198]
1. Escherichia coli [TaxId: 562] [110199] (3)
  SQ P21513 35-125
  1. 1smx
    1. chain a [105772]
    2. chain b [105773]
  2. 1sn8
    complexed with pb
    1. chain a [105807]
    2. chain b [105808]
  3. 1slj
    1. chain a [105718]
Probable GTPase EngC (YjeQ), N-terminal domain [110200]
1. Thermotoga maritima [TaxId: 2336] [110201] (1)
  SQ Q9X242 # TM1717
  1. 1u0l
    complexed with gdp, zn
    1. region a:3-68 [107551]
    2. region b:303-368 [107553]
    3. region c:603-668 [107555]
2. Bacillus subtilis [TaxId: 1423] [117197] (1)
  SQ O34530
  1. 1t9h
    complexed with act, ca, ium, zn
    1. region a:1-67 [112358]
Cold shock domain protein E1 (UNR) [117198]
1. Human (Homo sapiens) [TaxId: 9606] [117199] (1)
  SQ O75534 15-90
  1. 1wfq
    Structural genomics target; 1st CSD (of 9)
    1. chain a [114589]
S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) [117200]
1. Human (Homo sapiens) [TaxId: 9606] [117201] (1)
  SQ Q14690 173-278
  1. 1wi5
    Structural genomics target
    1. chain a [114661]
Exoribonuclease 2, RNB [159089]
RNase II; contains 3 S1-like domains in addition to an OB-fold embedded in the catalytic domain
1. Escherichia coli [TaxId: 562] [159090] (18)
  SQ P30850 1-82! SQ P30850 4-82! SQ P30850 5-82! SQ P30850 558-643! SQ P30850 558-644! SQ P30850 83-172
  1. 2ix0
    complexed with c5p, ca, mg
    1. region a:83-172 [147818]
  2. 2ix0
    complexed with c5p, ca, mg
    1. region a:4-82 [147819]
  3. 2ix0
    complexed with c5p, ca, mg
    1. region a:558-644 [147820]
  4. 2id0
    complexed with mn
    1. region a:558-644 [147606]
  5. 2id0
    complexed with mn
    1. region a:83-172 [147607]
  6. 2id0
    complexed with mn
    1. region a:5-82 [147608]
  7. 2id0
    automatically matched to 2ID0 A:558-644
    complexed with mn
    1. region b:558-644 [147610]
  8. 2id0
    automatically matched to 2ID0 A:83-172
    complexed with mn
    1. region b:83-172 [147611]
  9. 2id0
    automatically matched to 2ID0 A:5-82
    complexed with mn
    1. region b:5-82 [147612]
  10. 2id0
    automatically matched to 2ID0 A:558-644
    complexed with mn
    1. region c:558-644 [147614]
  11. 2id0
    automatically matched to 2ID0 A:83-172
    complexed with mn
    1. region c:83-172 [147615]
  12. 2id0
    automatically matched to 2ID0 A:5-82
    complexed with mn
    1. region c:5-82 [147616]
  13. 2id0
    automatically matched to 2ID0 A:558-644
    complexed with mn
    1. region d:558-644 [147618]
  14. 2id0
    automatically matched to 2ID0 A:83-172
    complexed with mn
    1. region d:83-172 [147619]
  15. 2id0
    automatically matched to 2ID0 A:5-82
    complexed with mn
    1. region d:5-82 [147620]
  16. 2ix1
    complexed with mg; mutant
    1. region a:83-172 [147822]
  17. 2ix1
    complexed with mg; mutant
    1. region a:558-643 [147823]
  18. 2ix1
    complexed with mg; mutant
    1. region a:1-82 [147824]
S1-domain of exosome component 3 (RRP40) [159091]
1. Saccharomyces cerevisiae [TaxId: 4932] [159092] (1)
  SQ Q08285 62-151
  1. 2ja9
    1. region a:62-151 [147950]
2. Human (Homo sapiens) [TaxId: 9606] [159093] (1)
  SQ Q9NQT5 108-195
  1. 2nn6
    mutant
    1. region g:107-194 [148307]
Ribonuclease II family protein DR0020 [159094]
1. Deinococcus radiodurans [TaxId: 1299] [159095] (4)
  SQ Q9RYD0 404-461
  1. 2r7d
    complexed with mg
    1. region a:404-461 [151629]
  2. 2r7d
    automatically matched to 2R7D A:404-461
    complexed with mg
    1. region b:404-461 [151631]
  3. 2r7d
    automatically matched to 2R7D A:404-461
    complexed with mg
    1. region c:404-461 [151633]
  4. 2r7f
    automatically matched to 2R7D A:404-461
    1. region a:404-461 [151635]
S1-domain of Ribosomal RNA-processing protein 4, RRP4 [159096]
1. Human (Homo sapiens) [TaxId: 9606] [159097] (1)
  SQ Q13868 73-167
  1. 2nn6
    mutant
    1. region h:73-167 [148310]
Exosome component 1, EXOSC1 [159098]
3'-5' exoribonuclease CSL4 homolog
1. Human (Homo sapiens) [TaxId: 9606] [159099] (1)
  SQ Q9Y3B2 61-185
  1. 2nn6
    includes extra C-terminal subdomain of a rubredoxin-like fold that is lacking the zinc-binding residues
    mutant
    1. region i:61-185 [148313]
S1-domain of exosome complex RNA-binding protein 1, ECR1 [159100]
1. Aeropyrum pernix [TaxId: 56636] [159101] (1)
  SQ Q9YC02 60-147
  1. 2z0s
    1. region a:60-147 [153916]
2. Sulfolobus solfataricus [TaxId: 2287] [159102] (2)
  SQ Q9UXC4 66-152
  1. 2je6
    complexed with 1pe, cl, peg; mutant
    1. region i:66-152 [147995]
  2. 2jea
    automatically matched to 2JE6 I:66-152
    complexed with 1pe; mutant
    1. region i:66-152 [148012]
3. Archaeoglobus fulgidus [TaxId: 2234] [159103] (3)
  SQ O29758 53-135
  1. 2ba0
    1. region a:53-135 [146096]
  2. 2ba0
    automatically matched to 2BA0 A:53-135
    1. region b:53-135 [146099]
  3. 2ba0
    automatically matched to 2BA0 A:53-135
    1. region c:53-135 [146102]
Exosome complex exonuclease RRP44 [159104]
member or the RNase II family; contains 3 S1-like domains; two of them are in tandem N-terminally to the catalytic domain and one is C-terminally to the catalytic domain that also contains an OB-fold
1. Saccharomyces cerevisiae [TaxId: 4932] [159105] (3)
  SQ Q08162 252-399! SQ Q08162 400-494! SQ Q08162 911-998
  1. 2vnu
    complexed with 1pe, mg, na; mutant
    1. region d:400-494 [153344]
  2. 2vnu
    complexed with 1pe, mg, na; mutant
    1. region d:911-998 [153345]
  3. 2vnu
    complexed with 1pe, mg, na; mutant
    1. region d:252-399 [153346]
Tex S1-domain [159106]
1. Pseudomonas aeruginosa [TaxId: 287] [159107] (3)
  SQ Q9HTY8 637-730
  1. 3bzk
    automatically matched to 3BZC A:637-730
    1. region a:637-730 [155780]
  2. 3bzc
    1. region a:637-730 [155755]
  3. 2oce
    1. region a:637-730 [148730]