Structural Classification of Proteins
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Superfamily: Nucleic acid-binding proteins

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: OB-fold [50198]
    barrel, closed or partly opened n=5, S=10 or S=8; greek-key
  4. Superfamily: Nucleic acid-binding proteins [50249]
    link to SUPERFAMILY database - Superfamily

Families:

  1. Anticodon-binding domain [50250] (7) picpic
    barrel, closed; n=5, S=10
  2. RecG "wedge" domain [69259] (1) picpic
  3. DNA helicase RuvA subunit, N-terminal domain [50259] (3) picpic
    barrel, closed; n=5, S=10
  4. Single strand DNA-binding domain, SSB [50263] (17) picpic
    barrel, closed; n=5, S=10
  5. Myf domain [50277] (7) picpic
  6. Cold shock DNA-binding domain-like [50282] (56) picpic
    barrel, closed; n=5, S=8
  7. TRAM domain [101768] (3) picpic
    Pfam 01938
  8. Hypothetical protein MTH1 (MT0001), insert domain [74955] (1) picpic
  9. DNA ligase/mRNA capping enzyme postcatalytic domain [50307] (6) picpic
  10. Phage ssDNA-binding proteins [50315] (5) picpic
    barrel, open; n*=5, S*=8; the members' structures vary greater that those from cellular organisms
  11. DNA replication initiator (cdc21/cdc54) N-terminal domain [89332] (1) picpic
  12. RNA polymerase subunit RBP8 [50321] (1) picpic
    duplication; contains tandem repeat of two incomplete OB-folds; forms a single barrel; n=8, S=10
  13. RecO N-terminal domain-like [117204] (1) picpic
    N-terminal part of Pfam 02565
  14. TIP49 domain [141315] (1) picpic
    N-terminal part of Pfam 06068; the RuvA-like OB-fold domain in RuvB-like eukaryotic proteins
  15. SSO2064-like [159109] (1) picpic
    Pfam 01796; DUF35; contains extra N-terminal zinc finger subdomain of the rubredoxin-like fold
  16. RNB domain-like [159112] (3) picpic
    Pfam 00773; RNase II catalytic domain; decorated OB-fold domain with extra C-terminal structures forming the active site

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MRC
site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk