Protein: 70S ribosome functional complex from Escherichia coli [TaxId: 562]

Lineage:

1. Root: scop
2. Class: Low resolution protein structures [58117]
   Not a true class
3. Fold: Ribosome and ribosomal fragments [58118]
4. Superfamily: Ribosome and ribosomal fragments [58119]
   uperfamily
5. Family: Ribosome complexes [58120]
6. Protein: 70S ribosome functional complex [58121]
7. Species: Escherichia coli [TaxId: 562] [58123]

PDB Entry Domains:

1. 2qal
   automatically matched to d1p6gh_
   complexed with mg, nmy
   1. region h:2-128 [150221]
2. 2qan
   automatically matched to d1p6gh_
   complexed with mg, nmy
   1. region h:2-128 [150275]
3. 2qbf
   automatically matched to d1p6gh_
   complexed with mg
   1. region h:2-128 [150495]
4. 2qbd
   automatically matched to d1p6gh_
   complexed with mg
   1. region h:2-128 [150441]
5. 3df1
   automatically matched to d1p6gh_
   complexed with hyg, mg
   1. region h:2-128 [157610]
6. 3df3
   automatically matched to d1p6gh_
   complexed with hyg, mg
   1. region h:2-128 [157664]
7. 2qam
   automatically matched to d1p851_
   complexed with mg, nmy, zn
   1. region 1:3-52 [150235]
8. 2qam
   automatically matched to d1p85n_
   complexed with mg, nmy, zn
   1. region p:1-114 [150256]
9. 2qoy
   automatically matched to d1p6gh_
   complexed with mg, nmy, scm
   1. region h:2-128 [151098]
10. 2qp0
    automatically matched to d1p6gh_
    complexed with mg, nmy, scm
    1. region h:2-128 [151151]
11. 2qao
    automatically matched to d1p851_
    complexed with mg, nmy, zn
    1. region 1:3-52 [150289]
12. 2qao
    automatically matched to d1p85n_
    complexed with mg, nmy, zn
    1. region p:1-114 [150309]
13. 2qb9
    automatically matched to d1p6gh_
    complexed with lll, mg
    1. region h:2-128 [150335]
14. 2qbb
    automatically matched to d1p6gh_
    complexed with lll, mg
    1. region h:2-128 [150388]
15. 2qbe
    automatically matched to d1p851_
    complexed with mg, zn
    1. region 1:3-52 [150455]
16. 2qbg
    automatically matched to d1p851_
    complexed with mg, zn
    1. region 1:3-52 [150509]
17. 2qoz
    automatically matched to d1p851_
    complexed with mg, nmy, zn
    1. region 1:3-52 [151112]
18. 2qp1
    automatically matched to d1p851_
    complexed with mg, nmy, zn
    1. region 1:3-52 [151165]
19. 2qbe
    automatically matched to d1p85n_
    complexed with mg, zn
    1. region p:1-114 [150476]
20. 2qbg
    automatically matched to d1p85n_
    complexed with mg, zn
    1. region p:1-114 [150530]
21. 2qoz
    automatically matched to d1p85n_
    complexed with mg, nmy, zn
    1. region p:1-114 [151132]
22. 2qp1
    automatically matched to d1p85n_
    complexed with mg, nmy, zn
    1. region p:1-114 [151185]
23. 3df2
    automatically matched to d1p851_
    complexed with mg, zn
    1. region 1:3-52 [157625]
24. 3df4
    automatically matched to d1p851_
    complexed with mg, zn
    1. region 1:3-52 [157679]
25. 3df2
    automatically matched to d1p85n_
    complexed with mg, zn
    1. region p:1-114 [157645]
26. 3df4
    automatically matched to d1p85n_
    complexed with mg, zn
    1. region p:1-114 [157699]
27. 2qbh
    automatically matched to d1p6gh_
    complexed with lll, mg
    1. region h:2-128 [150549]
28. 2qbj
    automatically matched to d1p6gh_
    complexed with lll, mg
    1. region h:2-128 [150603]
29. 2qou
    automatically matched to d1p6gh_
    complexed with mg, scm
    1. region h:2-128 [150992]
30. 2qow
    automatically matched to d1p6gh_
    complexed with mg, scm
    1. region h:2-128 [151045]
31. 2qba
    automatically matched to d1p851_
    complexed with lll, mg, zn
    1. region 1:3-52 [150349]
32. 2qbc
    automatically matched to d1p851_
    complexed with lll, mg, zn
    1. region 1:3-52 [150402]
33. 2qba
    automatically matched to d1p85n_
    complexed with lll, mg, zn
    1. region p:1-114 [150369]
34. 2qbc
    automatically matched to d1p85n_
    complexed with lll, mg, zn
    1. region p:1-114 [150422]
35. 2z4m
    automatically matched to d1p6gh_
    complexed with mg, par
    1. region h:2-128 [154113]
36. 2vho
    automatically matched to d1p6gh_
    complexed with mg
    1. region h:2-128 [153130]
37. 2z4k
    automatically matched to d1p6gh_
    complexed with mg, par
    1. region h:2-128 [154059]
38. 2qbi
    automatically matched to d1p851_
    complexed with lll, mg, zn
    1. region 1:3-52 [150563]
39. 2qbk
    automatically matched to d1p851_
    complexed with lll, mg, zn
    1. region 1:3-52 [150617]
40. 2qov
    automatically matched to d1p851_
    complexed with mg, zn
    1. region 1:3-52 [151006]
41. 2qox
    automatically matched to d1p851_
    complexed with mg, zn
    1. region 1:3-52 [151059]
42. 2qbi
    automatically matched to d1p85n_
    complexed with lll, mg, zn
    1. region p:1-114 [150584]
43. 2qbk
    automatically matched to d1p85n_
    complexed with lll, mg, zn
    1. region p:1-114 [150638]
44. 2qov
    automatically matched to d1p85n_
    complexed with mg, zn
    1. region p:1-114 [151026]
45. 2qox
    automatically matched to d1p85n_
    complexed with mg, zn
    1. region p:1-114 [151079]
46. 2vhp
    automatically matched to d1p6gh_
    complexed with mg
    1. region h:2-128 [153152]
47. 2z4l
    automatically matched to d1p851_
    complexed with mg, par, zn
    1. region 1:3-52 [154073]
48. 2z4n
    automatically matched to d1p851_
    complexed with mg, par, zn
    1. region 1:3-52 [154127]
49. 2z4l
    automatically matched to d1p85n_
    complexed with mg, par, zn
    1. region p:1-114 [154094]
50. 2z4n
    automatically matched to d1p85n_
    complexed with mg, par, zn
    1. region p:1-114 [154148]
51. 2vhm
    automatically matched to d1p851_
    complexed with mg; mutant
    1. region 1:3-52 [153059]
52. 2vhn
    automatically matched to d1p851_
    complexed with mg
    1. region 1:3-52 [153091]
53. 2vhm
    automatically matched to d1p85n_
    complexed with mg; mutant
    1. region p:1-114 [153079]
54. 2vhn
    automatically matched to d1p85n_
    complexed with mg
    1. region p:1-114 [153111]
55. 1qzc
    S12, sh44, lh69 and srl separately fitted into the cryo-EM map of EF-Tu ternary complex
    1. chain l [96627]
56. 1r2w
    L11 with 58nts of 23s rRNA fitted into the cryo-em map of the 70S ribosome
    1. chain a [96885]
57. 1r2x
    L11 with 58nts of 23s rRNA fitted into the cryo-em map of EF-Tu ternary complex
    1. chain a [96887]
58. 2rdo
    automatically matched to d1p851_
    1. region 1:3-52 [151935]
59. 2rdo
    automatically matched to d1p85n_
    1. region p:1-114 [151956]
60. 1qzd
    EF-Tu/kirromycin model fitted into the cryo-EM map of EF-Tu ternary complex
    1. chain a [96628]
61. 1mj1
    Fitting the ternary complex of EF-TU/tRNA/GTP in the cryo-EM map
    1. chain a [79175]
    2. chain o [79179]
    3. chain p [79180]
    4. chain l [79178]
62. 1eg0
    1. chain a [45807]
    2. chain b [45808]
    3. chain c [45809]
    4. chain d [45810]
    5. chain e [45811]
    6. chain f [45812]
    7. chain g [45813]
    8. chain h [45814]
    9. chain j [45816]
    10. chain k [45817]
    11. chain n [45820]
63. 1p86
    50S subunit fit in the cryo-EM map of 70S ribosome
    1. chain a [87898]
    2. chain b [87899]
    3. chain c [87900]
    4. chain d [87901]
    5. chain e [87902]
    6. chain f [87903]
    7. chain g [87904]
    8. chain h [87905]
    9. chain i [87906]
    10. chain j [87907]
    11. chain k [87908]
    12. chain l [87909]
    13. chain m [87910]
    14. chain n [87911]
    15. chain o [87912]
    16. chain q [87913]
    17. chain r [87914]
    18. chain s [87915]
    19. chain t [87916]
    20. chain u [87917]
    21. chain w [87918]
    22. chain x [87919]
    23. chain z [87920]
    24. chain 1 [87894]
    25. chain 4 [87895]
64. 1p87
    30S subunit fit in the cryo-EM map of 70S ribosome
    1. chain b [87922]
    2. chain c [87923]
    3. chain d [87924]
    4. chain e [87925]
    5. chain f [87926]
    6. chain g [87927]
    7. chain h [87928]
    8. chain i [87929]
    9. chain j [87930]
    10. chain k [87931]
    11. chain l [87932]
    12. chain m [87933]
    13. chain n [87934]
    14. chain o [87935]
    15. chain p [87936]
    16. chain q [87937]
    17. chain r [87938]
    18. chain s [87939]
    19. chain t [87940]
65. 1pn6
    domain-wise fitting of the crystal structure of T. thermophilus EF-G in the cryo-EM map of 70S ribosome
    1. chain a [88161]
66. 1pn7
    S12, L11 proteins and p-tRNA aligned to the cryo-EM map
    1. chain o [88164]
    2. chain l [88163]
67. 1pn8
    S12, L11 proteins and E-site tRNA aligned to the cryo-EM map
    1. chain o [88167]
    2. chain l [88166]
68. 1mi6
    Docking of the modified RF2 x-ray structure
    1. chain a [79149]
69. 1p85
    50S subunit fit in the cryo-EM map of 70S ribosome
    1. chain a [87870]
    2. chain b [87871]
    3. chain c [87872]
    4. chain d [87873]
    5. chain e [87874]
    6. chain f [87875]
    7. chain g [87876]
    8. chain h [87877]
    9. chain i [87878]
    10. chain j [87879]
    11. chain k [87880]
    12. chain l [87881]
    13. chain m [87882]
    14. chain n [87883]
    15. chain o [87884]
    16. chain q [87885]
    17. chain r [87886]
    18. chain s [87887]
    19. chain t [87888]
    20. chain u [87889]
    21. chain w [87890]
    22. chain x [87891]
    23. chain z [87892]
    24. chain 1 [87867]
    25. chain 4 [87868]
70. 1p6g
    30S subunit fit in the cryo-EM map of 70S ribosome
    1. chain c [87821]
    2. chain d [87822]
    3. chain e [87823]
    4. chain f [87824]
    5. chain g [87825]
    6. chain h [87826]
    7. chain i [87827]
    8. chain j [87828]
    9. chain k [87829]
    10. chain l [87830]
    11. chain m [87831]
    12. chain n [87832]
    13. chain o [87833]
    14. chain p [87834]
    15. chain q [87835]
    16. chain r [87836]
    17. chain s [87837]
    18. chain t [87838]
71. 1t1m
    RRF-binding site
    1. chain c [106256]
72. 1ml5
    also include low case chains a;b;c;d;e;f;g;h;l;m;n;o;p;q;r;s;t;u;v;w;x
    termination complex with release factor 2
    1. chain z [79280]
    2. chain c [79259]
    3. chain e [79260]
    4. chain f [79261]
    5. chain g [79262]
    6. chain h [79263]
    7. chain i [79264]
    8. chain j [79265]
    9. chain k [79266]
    10. chain l [79267]
    11. chain m [79268]
    12. chain n [79269]
    13. chain o [79270]
    14. chain p [79271]
    15. chain q [79272]
    16. chain r [79273]
    17. chain s [79274]
    18. chain t [79275]
    19. chain u [79276]
    20. chain v [79277]
    21. chain w [79278]
    22. chain x [79279]
73. 1ls2
    Fitting of EF-TU and tRNA in the cryo-EM map
    1. chain a [74238]
74. 1pns
    30S subunit; the coordinates of 50S subunit in 1pnu
    1. chain b [88169]
    2. chain c [88170]
    3. chain d [88171]
    4. chain e [88172]
    5. chain f [88173]
    6. chain g [88174]
    7. chain h [88175]
    8. chain i [88176]
    9. chain j [88177]
    10. chain k [88178]
    11. chain l [88179]
    12. chain m [88180]
    13. chain n [88181]
    14. chain o [88182]
    15. chain p [88183]
    16. chain q [88184]
    17. chain r [88185]
    18. chain s [88186]
    19. chain t [88187]
75. 1pnx
    30S subunit; the coordinates of 50S subunit in 1pny
    1. chain b [88225]
    2. chain c [88226]
    3. chain d [88227]
    4. chain e [88228]
    5. chain f [88229]
    6. chain g [88230]
    7. chain h [88231]
    8. chain i [88232]
    9. chain j [88233]
    10. chain k [88234]
    11. chain l [88235]
    12. chain m [88236]
    13. chain n [88237]
    14. chain o [88238]
    15. chain p [88239]
    16. chain q [88240]
    17. chain r [88241]
    18. chain s [88242]
    19. chain t [88243]
76. 3bbx
    automatically matched to d1p851_
    complexed with mg
    1. region 1:3-52 [155095]
77. 3bbx
    automatically matched to d1p85n_
    complexed with mg
    1. region p:1-114 [155113]
78. 1pnu
    50S subunit; the coordinates of 30S subunit in 1pns
    1. chain 1 [88192]
    2. chain 2 [88193]
    3. chain 3 [88194]
    4. chain 4 [88195]
    5. chain 5 [88196]
    6. chain a [88198]
    7. chain b [88199]
    8. chain c [88200]
    9. chain d [88201]
    10. chain e [88202]
    11. chain f [88203]
    12. chain g [88204]
    13. chain h [88205]
    14. chain i [88206]
    15. chain j [88207]
    16. chain k [88208]
    17. chain l [88209]
    18. chain m [88210]
    19. chain n [88211]
    20. chain o [88212]
    21. chain p [88213]
    22. chain q [88214]
    23. chain r [88215]
    24. chain s [88216]
    25. chain t [88217]
    26. chain u [88218]
    27. chain v [88219]
    28. chain w [88220]
    29. chain x [88221]
    30. chain y [88222]
    31. chain z [88223]
79. 1voq
    30S subunit; the coordinates of 50S subunit in a different PDB entry
    1. chain a [113683]
    2. chain b [113684]
    3. chain c [113685]
    4. chain d [113686]
    5. chain e [113687]
    6. chain f [113688]
    7. chain g [113689]
    8. chain h [113690]
    9. chain i [113691]
    10. chain j [113692]
    11. chain k [113693]
    12. chain l [113694]
    13. chain m [113695]
    14. chain n [113696]
    15. chain o [113697]
    16. chain p [113698]
    17. chain q [113699]
    18. chain r [113700]
    19. chain s [113701]
    20. chain t [113702]
80. 1vos
    30S subunit; the coordinates of 50S subunit in a different PDB entry
    1. chain a [113733]
    2. chain b [113734]
    3. chain c [113735]
    4. chain d [113736]
    5. chain e [113737]
    6. chain f [113738]
    7. chain g [113739]
    8. chain h [113740]
    9. chain i [113741]
    10. chain j [113742]
    11. chain k [113743]
    12. chain l [113744]
    13. chain m [113745]
    14. chain n [113746]
    15. chain o [113747]
    16. chain p [113748]
    17. chain q [113749]
    18. chain r [113750]
    19. chain s [113751]
    20. chain t [113752]
81. 1vov
    30S subunit; the coordinates of 50S subunit in a different PDB entry
    1. chain a [113783]
    2. chain b [113784]
    3. chain c [113785]
    4. chain d [113786]
    5. chain e [113787]
    6. chain f [113788]
    7. chain g [113789]
    8. chain h [113790]
    9. chain i [113791]
    10. chain j [113792]
    11. chain k [113793]
    12. chain l [113794]
    13. chain m [113795]
    14. chain n [113796]
    15. chain o [113797]
    16. chain p [113798]
    17. chain q [113799]
    18. chain r [113800]
    19. chain s [113801]
    20. chain t [113802]
82. 1vox
    30S subunit; the coordinates of 50S subunit in a different PDB entry
    1. chain a [113833]
    2. chain b [113834]
    3. chain c [113835]
    4. chain d [113836]
    5. chain e [113837]
    6. chain f [113838]
    7. chain g [113839]
    8. chain h [113840]
    9. chain i [113841]
    10. chain j [113842]
    11. chain k [113843]
    12. chain l [113844]
    13. chain m [113845]
    14. chain n [113846]
    15. chain o [113847]
    16. chain p [113848]
    17. chain q [113849]
    18. chain r [113850]
    19. chain s [113851]
    20. chain t [113852]
83. 1voz
    30S subunit; the coordinates of 50S subunit in a different PDB entry
    1. chain a [113883]
    2. chain b [113884]
    3. chain c [113885]
    4. chain d [113886]
    5. chain e [113887]
    6. chain f [113888]
    7. chain g [113889]
    8. chain h [113890]
    9. chain i [113891]
    10. chain j [113892]
    11. chain k [113893]
    12. chain l [113894]
    13. chain m [113895]
    14. chain n [113896]
    15. chain o [113897]
    16. chain p [113898]
    17. chain q [113899]
    18. chain r [113900]
    19. chain s [113901]
    20. chain t [113902]
84. 1pny
    50S subunit; the coordinates of 30S subunit in 1pnx
    1. chain 1 [88245]
    2. chain 2 [88246]
    3. chain 3 [88247]
    4. chain 4 [88248]
    5. chain 5 [88249]
    6. chain a [88251]
    7. chain b [88252]
    8. chain c [88253]
    9. chain d [88254]
    10. chain e [88255]
    11. chain f [88256]
    12. chain g [88257]
    13. chain h [88258]
    14. chain i [88259]
    15. chain j [88260]
    16. chain k [88261]
    17. chain l [88262]
    18. chain m [88263]
    19. chain n [88264]
    20. chain o [88265]
    21. chain p [88266]
    22. chain q [88267]
    23. chain r [88268]
    24. chain s [88269]
    25. chain t [88270]
    26. chain u [88271]
    27. chain v [88272]
    28. chain w [88273]
    29. chain x [88274]
    30. chain y [88275]
    31. chain z [88276]
85. 1jqm
    Fitting of L11 protein and elongation factor G (EF-G) in the cryo-EM map
    1. chain a [63235]
    2. chain b [63236]
86. 1jqs
    Fitting of L11 and EF-G domains G' and V in the cryo-EM map
    1. chain a [63237]
    2. chain b [63238]
    3. chain c [63239]
87. 1jqt
    Fitting of L11 in the cryo-EM map
    1. chain a [63240]
88. 1vor
    50S subunit; the coordinates of 30S subunit in a different PDB entry
    1. chain 1 [113703]
    2. chain 2 [113704]
    3. chain 3 [113705]
    4. chain 4 [113706]
    5. chain 5 [113707]
    6. chain 6 [113708]
    7. chain 7 [113709]
    8. chain d [113710]
    9. chain e [113711]
    10. chain f [113712]
    11. chain g [113713]
    12. chain h [113714]
    13. chain i [113715]
    14. chain j [113716]
    15. chain k [113717]
    16. chain l [113718]
    17. chain m [113719]
    18. chain n [113720]
    19. chain o [113721]
    20. chain p [113722]
    21. chain q [113723]
    22. chain r [113724]
    23. chain s [113725]
    24. chain t [113726]
    25. chain u [113727]
    26. chain v [113728]
    27. chain w [113729]
    28. chain x [113730]
    29. chain y [113731]
    30. chain z [113732]
89. 1vou
    50S subunit; the coordinates of 30S subunit in a different PDB entry
    1. chain 1 [113753]
    2. chain 2 [113754]
    3. chain 3 [113755]
    4. chain 4 [113756]
    5. chain 5 [113757]
    6. chain 6 [113758]
    7. chain 7 [113759]
    8. chain d [113760]
    9. chain e [113761]
    10. chain f [113762]
    11. chain g [113763]
    12. chain h [113764]
    13. chain i [113765]
    14. chain j [113766]
    15. chain k [113767]
    16. chain l [113768]
    17. chain m [113769]
    18. chain n [113770]
    19. chain o [113771]
    20. chain p [113772]
    21. chain q [113773]
    22. chain r [113774]
    23. chain s [113775]
    24. chain t [113776]
    25. chain u [113777]
    26. chain v [113778]
    27. chain w [113779]
    28. chain x [113780]
    29. chain y [113781]
    30. chain z [113782]
90. 1vow
    50S subunit; the coordinates of 30S subunit in a different PDB entry
    1. chain 1 [113803]
    2. chain 2 [113804]
    3. chain 3 [113805]
    4. chain 4 [113806]
    5. chain 5 [113807]
    6. chain 6 [113808]
    7. chain 7 [113809]
    8. chain d [113810]
    9. chain e [113811]
    10. chain f [113812]
    11. chain g [113813]
    12. chain h [113814]
    13. chain i [113815]
    14. chain j [113816]
    15. chain k [113817]
    16. chain l [113818]
    17. chain m [113819]
    18. chain n [113820]
    19. chain o [113821]
    20. chain p [113822]
    21. chain q [113823]
    22. chain r [113824]
    23. chain s [113825]
    24. chain t [113826]
    25. chain u [113827]
    26. chain v [113828]
    27. chain w [113829]
    28. chain x [113830]
    29. chain y [113831]
    30. chain z [113832]
91. 1voy
    50S subunit; the coordinates of 30S subunit in a different PDB entry
    1. chain 1 [113853]
    2. chain 2 [113854]
    3. chain 3 [113855]
    4. chain 4 [113856]
    5. chain 5 [113857]
    6. chain 6 [113858]
    7. chain 7 [113859]
    8. chain d [113860]
    9. chain e [113861]
    10. chain f [113862]
    11. chain g [113863]
    12. chain h [113864]
    13. chain i [113865]
    14. chain j [113866]
    15. chain k [113867]
    16. chain l [113868]
    17. chain m [113869]
    18. chain n [113870]
    19. chain o [113871]
    20. chain p [113872]
    21. chain q [113873]
    22. chain r [113874]
    23. chain s [113875]
    24. chain t [113876]
    25. chain u [113877]
    26. chain v [113878]
    27. chain w [113879]
    28. chain x [113880]
    29. chain y [113881]
    30. chain z [113882]
92. 1vp0
    50S subunit; the coordinates of 30S subunit in a different PDB entry
    1. chain 1 [113903]
    2. chain 2 [113904]
    3. chain 3 [113905]
    4. chain 4 [113906]
    5. chain 5 [113907]
    6. chain 6 [113908]
    7. chain 7 [113909]
    8. chain d [113910]
    9. chain e [113911]
    10. chain f [113912]
    11. chain g [113913]
    12. chain h [113914]
    13. chain i [113915]
    14. chain j [113916]
    15. chain k [113917]
    16. chain l [113918]
    17. chain m [113919]
    18. chain n [113920]
    19. chain o [113921]
    20. chain p [113922]
    21. chain q [113923]
    22. chain r [113924]
    23. chain s [113925]
    24. chain t [113926]
    25. chain u [113927]
    26. chain v [113928]
    27. chain w [113929]
    28. chain x [113930]
    29. chain y [113931]
    30. chain z [113932]