Structural Classification of Proteins
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Protein: Immunoglobulin light chain kappa variable domain, VL-kappa from Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Immunoglobulin-like beta-sandwich [48725]
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. Superfamily: Immunoglobulin [48726]
    link to SUPERFAMILY database - Superfamily
  5. Family: V set domains (antibody variable domain-like) [48727]
  6. Protein: Immunoglobulin light chain kappa variable domain, VL-kappa [88519]
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. Species: Mouse (Mus musculus), cluster 2 [TaxId: 10090] [88526]

PDB Entry Domains:

  1. 1j05 picpicxref
    part of anti-CEA Fv T84.66
    complexed with gol, po4
    1. chain a [90735] picpiclink
    2. chain l [90738] picpiclink
  2. 1f58 picpicxrefxrefxref
    part of anti-gp120 (HIV-1) Fab 58.2
    mutant
    1. region l:1-107 [20350] picpiclink
  3. 1h0d picpicxrefxrefxrefxref
    part of anti-angiogenin FAB; conflict: annotated in PDB as human
    complexed with gol, pca, so4
    1. region a:1-106 [83425] picpiclink
  4. 2hrp picpicxrefxrefxref
    part of Fab F11.2.32 against HIV-1 protease
    1. region l:1-107 [20170] picpiclink
    2. region m:1-107 [20172] picpiclink
  5. 1i7z picpicxrefxrefxref
    part of humanized Fab GNC92H2
    complexed with coc
    1. region a:1-107 [61919] picpiclink
    2. region c:1-107 [61923] picpiclink
  6. 1ejo picpicxrefxrefxref
    part of anti-FMDV Fab 4C4
    1. region l:2001-2111 [20428] picpiclink
  7. 1iqw picpicxrefxrefxref
    part of anti-human Fas Fab HFE7a
    1. region l:1-111 [66279] picpiclink
  8. 1mf2 picpicxrefxrefxref
    part of Fab F11.2.32 against HIV-1 protease
    1. region l:1-107 [20174] picpiclink
    2. region m:1-107 [20176] picpiclink
  9. 2gcy picpicxref
    automatically matched to d1egjl1
    complexed with so4
    1. region a:2-111 [134994] picpiclink
  10. 1moe picpicxref
    part of anti-CEA scFv T84.66; VL to VH linkage: includes linker residues 112-119; assembles as a diabody
    complexed with so4
    1. region a:1-119 [85030] picpiclink
    2. region b:1-119 [85032] picpiclink
  11. 2aab picpicxrefxref
    1. region l:1-107 [144795] picpiclink
  12. 2nyy picpicxrefxrefxref
    automatically matched to d1egjl1
    complexed with ca, zn
    1. region c:2-111 [138829] picpiclink
  13. 3f58 picpicxrefxrefxref
    part of anti-gp120 (HIV-1) Fab 58.2
    mutant
    1. region l:1-107 [20352] picpiclink
  14. 2f58 picpicxrefxrefxref
    part of anti-gp120 (HIV-1) Fab 58.2
    complexed with arn
    1. region l:1-107 [20354] picpiclink
  15. 1ggb picpicxrefxrefxref
    part of Fab 50.1
    1. region l:1-107 [19874] picpiclink
  16. 1ibg picpicxrefxrefxref
    part of Fab 40-50
    complexed with cu, obn
    1. region l:2-107 [20048] picpiclink
  17. 1ggc picpicxrefxrefxref
    part of Fab 50.1
    1. region l:1-107 [19880] picpiclink
  18. 2gsi picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1egjl1
    complexed with na
    1. region a:1-107 [135579] picpiclink
  19. 2gsi picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1egjl1
    complexed with na
    1. region c:1-107 [135581] picpiclink
  20. 2gsi picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1egjl1
    complexed with na
    1. region e:1-107 [135583] picpiclink
  21. 2gsi picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1egjl1
    complexed with na
    1. region g:1-107 [135585] picpiclink
  22. 1ggi picpicxrefxrefxref
    part of Fab 50.1
    1. region l:1-107 [19876] picpiclink
    2. region m:1-107 [19878] picpiclink
  23. 1f11 picpicxrefxrefxref
    part of anti-Pres2 Fab F124
    1. region a:1-107 [20456] picpiclink
    2. region c:1-107 [20458] picpiclink
  24. 1egj picpicxrefxrefxrefxref
    part of Fab 13B5 against cytokine receptor common beta chain domain 4
    complexed with nag
    1. region l:1-107 [20500] picpiclink
  25. 1ai1 picpicxrefxrefxref
    part of Fab 59.1
    1. region l:1-108 [19882] picpiclink
  26. 1nsn picpicxrefxrefxrefxref
    part of Fab N10
    1. region l:1-107 [20070] picpiclink
  27. 1acy picpicxrefxrefxref
    part of Fab 59.1
    1. region l:1-108 [19884] picpiclink
  28. 1afv picpicxrefxrefxrefxref
    part of Fab 25.3 against HIV-1 capsid protein (p24)
    complexed with pb
    1. region l:1-112 [20130] picpiclink
    2. region m:1-112 [20132] picpiclink
  29. 32c2 picpicxrefxrefxref
    part of the cytochrome P450-arom activity suppressing Fab 32C2
    1. region a:1-110 [20438] picpiclink
  30. 2nz9 picpicxrefxrefxrefxrefxrefxref
    automatically matched to d1egjl1
    complexed with ca, zn
    1. region c:2-111 [138840] picpiclink
  31. 2nz9 picpicxrefxrefxrefxrefxrefxref
    automatically matched to d1egjl1
    complexed with ca, zn
    1. region e:2-111 [138844] picpiclink
  32. 1qnz picpicxref
    part of anti-HIV Fv 0.5B
    1. chain l [20448] picpiclink
  33. 1qfw picpicxrefxrefxrefxrefxref
    part of anti-[gonadotropin alpha subunit] Fv
    complexed with nag
    1. chain l [20434] picpiclink
  34. 2r69 picpicxrefxref
    automatically matched to d1ejol1
    1. region l:1-111 [151602] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk