Structural Classification of Proteins
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Family: Insert subdomain of RNA polymerase alpha subunit

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Insert subdomain of RNA polymerase alpha subunit [56552]
    unusual fold; contains a left-handed beta-alpha-beta unit
  4. Superfamily: Insert subdomain of RNA polymerase alpha subunit [56553]
    link to SUPERFAMILY database - Superfamily
  5. Family: Insert subdomain of RNA polymerase alpha subunit [56554]

Protein Domains:

  1. RNA polymerase alpha subunit [56555]
    1. Escherichia coli [TaxId: 562] [56556] (1)
      1. 1bdf picpicxref
        mutant
        1. region a:53-178 [42602] picpiclink
        2. region b:53-178 [42603] picpiclink
        3. region c:53-178 [42604] picpiclink
        4. region d:53-178 [42605] picpiclink
    2. Thermus aquaticus [TaxId: 271] [64461] (7)
      1. 1ynj picpicxrefxrefxrefxrefxref
        automatically matched to d1i6va2
        complexed with srn, zn
        1. region a:50-172 [123738] picpiclink
      2. 1ynj picpicxrefxrefxrefxrefxref
        automatically matched to d1i6va2
        complexed with srn, zn
        1. region b:50-172 [123740] picpiclink
      3. 1i6v picpicxrefxrefxrefxref
        complexed with mg, rfp, zn
        1. region a:50-172 [61853] picpiclink
        2. region b:50-172 [61855] picpiclink
      4. 1ynn picpicxrefxrefxrefxrefxref
        automatically matched to d1i6va2
        complexed with rfp, zn
        1. region a:50-172 [123743] picpiclink
      5. 1ynn picpicxrefxrefxrefxrefxref
        automatically matched to d1i6va2
        complexed with rfp, zn
        1. region b:50-172 [123745] picpiclink
      6. 2gho picpicxrefxrefxrefxref
        automatically matched to d1i6va2
        1. region a:50-172 [135181] picpiclink
      7. 2gho picpicxrefxrefxrefxref
        automatically matched to d1i6va2
        1. region b:50-172 [135183] picpiclink
    3. Thermus thermophilus [TaxId: 274] [75595] (30)
      SQ Q9Z9H6; part of multichain biological unit
      1. 1smy picpicxrefxrefxrefxrefxrefxrefxref
        complexed with g4p, mg, zn
        1. region a:50-172 [105775] picpiclink
        2. region b:50-172 [105777] picpiclink
        3. region k:50-172 [105785] picpiclink
        4. region l:50-172 [105787] picpiclink
      2. 2a6h picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7a2
        complexed with mg, std, zn
        1. region a:50-172 [126261] picpiclink
      3. 2a6h picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7a2
        complexed with mg, std, zn
        1. region b:50-172 [126263] picpiclink
      4. 2a6h picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7a2
        complexed with mg, std, zn
        1. region k:50-172 [126271] picpiclink
      5. 2a6h picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7a2
        complexed with mg, std, zn
        1. region l:50-172 [126273] picpiclink
      6. 2a69 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7a2
        complexed with mg, rpt, zn
        1. region a:50-172 [126212] picpiclink
      7. 2a69 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7a2
        complexed with mg, rpt, zn
        1. region b:50-172 [126214] picpiclink
      8. 2a69 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7a2
        complexed with mg, rpt, zn
        1. region k:50-172 [126222] picpiclink
      9. 2a69 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7a2
        complexed with mg, rpt, zn
        1. region l:50-172 [126224] picpiclink
      10. 2a68 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7a2
        complexed with mg, rbt, zn
        1. region a:50-172 [126192] picpiclink
      11. 2a68 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7a2
        complexed with mg, rbt, zn
        1. region b:50-172 [126194] picpiclink
      12. 2a68 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7a2
        complexed with mg, rbt, zn
        1. region k:50-172 [126202] picpiclink
      13. 2a68 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7a2
        complexed with mg, rbt, zn
        1. region l:50-172 [126204] picpiclink
      14. 2be5 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7a2
        complexed with mg, tgt, zn
        1. region a:50-172 [128352] picpiclink
      15. 2be5 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7a2
        complexed with mg, tgt, zn
        1. region b:50-172 [128354] picpiclink
      16. 2be5 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7a2
        complexed with mg, tgt, zn
        1. region k:50-172 [128362] picpiclink
      17. 2be5 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7a2
        complexed with mg, tgt, zn
        1. region l:50-172 [128364] picpiclink
      18. 1iw7 picpicxrefxrefxrefxrefxrefxrefxref
        complexed with mg, pb
        1. region a:50-172 [71471] picpiclink
        2. region b:50-172 [71473] picpiclink
        3. region k:50-172 [71479] picpiclink
        4. region l:50-172 [71481] picpiclink
      19. 2a6e picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7a2
        complexed with mg, zn
        1. region a:50-172 [126241] picpiclink
      20. 2a6e picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7a2
        complexed with mg, zn
        1. region b:50-172 [126243] picpiclink
      21. 2a6e picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7a2
        complexed with mg, zn
        1. region k:50-172 [126251] picpiclink
      22. 2a6e picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7a2
        complexed with mg, zn
        1. region l:50-172 [126253] picpiclink
      23. 1zyr picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7a2
        complexed with mg, std, zn
        1. region a:50-172 [125850] picpiclink
      24. 1zyr picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7a2
        complexed with mg, std, zn
        1. region b:50-172 [125852] picpiclink
      25. 1zyr picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7a2
        complexed with mg, std, zn
        1. region k:50-172 [125860] picpiclink
      26. 1zyr picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7a2
        complexed with mg, std, zn
        1. region l:50-172 [125862] picpiclink
      27. 2cw0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7a2
        complexed with mg, zn
        1. region a:50-172 [130899] picpiclink
      28. 2cw0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7a2
        complexed with mg, zn
        1. region b:50-172 [130901] picpiclink
      29. 2cw0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7a2
        complexed with mg, zn
        1. region k:50-172 [130909] picpiclink
      30. 2cw0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7a2
        complexed with mg, zn
        1. region l:50-172 [130911] picpiclink
  2. RPB3 [64462]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [64463] (25)
      SQ P16370; part of multichain biological unit
      1. 1twf picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mn, utp, zn
        1. region c:42-172 [112728] picpiclink
      2. 1i50 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mn, zn
        1. region c:42-172 [61757] picpiclink
      3. 1k83 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with ilx, mn, trx, zn
        1. region c:42-172 [68278] picpiclink
      4. 1i3q picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mg, zn
        1. region c:42-172 [61610] picpiclink
      5. 2nvq picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qc2
        complexed with dut, mg, zn
        1. region c:42-172 [138637] picpiclink
      6. 1twc picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with gtp, mn, zn
        1. region c:42-172 [112714] picpiclink
      7. 1twa picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with atp, mn, zn
        1. region c:42-172 [112699] picpiclink
      8. 1i6h picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mg, zn
        1. region c:42-172 [61834] picpiclink
      9. 1twh picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with atp, mn, zn
        1. region c:42-172 [112754] picpiclink
      10. 1twg picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with ctp, mn, zn
        1. region c:42-172 [112741] picpiclink
      11. 2nvy picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qc2
        complexed with mn, zn
        1. region c:42-172 [138683] picpiclink
      12. 2e2i picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qc2
        complexed with dgt, mg, zn
        1. region c:42-172 [131997] picpiclink
      13. 2e2j picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qc2
        complexed with g2p, mg, zn
        1. region c:42-172 [132010] picpiclink
      14. 2b63 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qc2
        complexed with 5bu, mg, zn
        1. region c:42-172 [127920] picpiclink
      15. 2ja7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qc2
        complexed with bru, mg, tt, zn
        1. region c:42-172 [138193] picpiclink
      16. 2ja7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qc2
        complexed with bru, mg, tt, zn
        1. region o:42-172 [138209] picpiclink
      17. 2nvx picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qc2
        complexed with dut, mg, zn
        1. region c:42-172 [138670] picpiclink
      18. 2nvt picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qc2
        complexed with g2p, mg, zn
        1. region c:42-172 [138650] picpiclink
      19. 2ja5 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qc2
        complexed with bru, mg, zn
        1. region c:42-172 [138161] picpiclink
      20. 2ja8 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qc2
        complexed with bru, mg, tt, zn
        1. region c:42-172 [138225] picpiclink
      21. 2b8k picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qc2
        complexed with zn
        1. region c:42-172 [128079] picpiclink
      22. 2ja6 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qc2
        complexed with bru, mg, tt, zn
        1. region c:42-172 [138177] picpiclink
      23. 2yu9 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qc2
        complexed with mg, utp, zn
        1. region c:42-172 [140067] picpiclink
      24. 2e2h picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qc2
        complexed with gtp, mg, zn
        1. region c:42-172 [131984] picpiclink
      25. 2nvz picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qc2
        complexed with mg, utp, zn
        1. region c:42-172 [138696] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk