Structural Classification of Proteins
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Family: RPB5

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: RPB5-like RNA polymerase subunit [55286]
    core: beta-alpha-beta-alpha-beta(2); 2 layers, alpha/beta
  4. Superfamily: RPB5-like RNA polymerase subunit [55287]
    link to SUPERFAMILY database - Superfamily
  5. Family: RPB5 [55288]

Protein Domains:

  1. RNA polymerase subunit RBP5 (RNA polymerase subunit H) [55289]
    1. Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262] [55290] (1)
      1. 1eik picpic
        1. chain a [39751] picpiclink
    2. Archaeon Methanococcus jannaschii [TaxId: 2190] [55291] (1)
      1. 1hmj picpic
        probably incorrect structure
        1. chain a [39752] picpiclink
  2. Eukaryotic RPB5 C-terminal domain [55292]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [55293] (26)
      SQ P20434; part of multichain biological unit
      1. 1dzf picpicxref
        1. region a:144-215 [39753] picpiclink
      2. 1twf picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mn, utp, zn
        1. region e:144-215 [112730] picpiclink
      3. 1i50 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mn, zn
        1. region e:144-215 [61759] picpiclink
      4. 1k83 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with ilx, mn, trx, zn
        1. region e:144-215 [68280] picpiclink
      5. 1i3q picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mg, zn
        1. region e:144-215 [61612] picpiclink
      6. 2nvq picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1dzfa2
        complexed with dut, mg, zn
        1. region e:144-215 [138639] picpiclink
      7. 1twc picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with gtp, mn, zn
        1. region e:144-215 [112716] picpiclink
      8. 1twa picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with atp, mn, zn
        1. region e:144-215 [112701] picpiclink
      9. 1i6h picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mg, zn
        1. region e:144-215 [61836] picpiclink
      10. 1twh picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with atp, mn, zn
        1. region e:144-215 [112756] picpiclink
      11. 1twg picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with ctp, mn, zn
        1. region e:144-215 [112743] picpiclink
      12. 2nvy picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1dzfa2
        complexed with mn, zn
        1. region e:144-215 [138685] picpiclink
      13. 2e2i picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1dzfa2
        complexed with dgt, mg, zn
        1. region e:144-215 [131999] picpiclink
      14. 2e2j picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1dzfa2
        complexed with g2p, mg, zn
        1. region e:144-215 [132012] picpiclink
      15. 2b63 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1dzfa2
        complexed with 5bu, mg, zn
        1. region e:144-215 [127923] picpiclink
      16. 2ja7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1dzfa2
        complexed with bru, mg, tt, zn
        1. region e:144-215 [138196] picpiclink
      17. 2ja7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1dzfa2
        complexed with bru, mg, tt, zn
        1. region q:144-215 [138212] picpiclink
      18. 2nvx picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1dzfa2
        complexed with dut, mg, zn
        1. region e:144-215 [138672] picpiclink
      19. 2nvt picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1dzfa2
        complexed with g2p, mg, zn
        1. region e:144-215 [138652] picpiclink
      20. 2ja5 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1dzfa2
        complexed with bru, mg, zn
        1. region e:144-215 [138164] picpiclink
      21. 2ja8 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1dzfa2
        complexed with bru, mg, tt, zn
        1. region e:144-215 [138228] picpiclink
      22. 2b8k picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1dzfa2
        complexed with zn
        1. region e:144-215 [128082] picpiclink
      23. 2ja6 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1dzfa2
        complexed with bru, mg, tt, zn
        1. region e:144-215 [138180] picpiclink
      24. 2yu9 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1dzfa2
        complexed with mg, utp, zn
        1. region e:144-215 [140069] picpiclink
      25. 2e2h picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1dzfa2
        complexed with gtp, mg, zn
        1. region e:144-215 [131986] picpiclink
      26. 2nvz picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1dzfa2
        complexed with mg, utp, zn
        1. region e:144-215 [138698] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk