Structural Classification of Proteins

Superfamily: RPB5-like RNA polymerase subunit

: uperfamily

Lineage:

Root: scop
Class: Alpha and beta proteins (a+b) [53931]
Mainly antiparallel beta sheets (segregated alpha and beta regions)
Fold: RPB5-like RNA polymerase subunit [55286]
core: beta-alpha-beta-alpha-beta(2); 2 layers, alpha/beta
Superfamily: RPB5-like RNA polymerase subunit [55287]
uperfamily

Families:

RPB5 [55288] (3)
1. RNA polymerase subunit RBP5 (RNA polymerase subunit H) [55289]
  1. Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262] [55290] (1)
    1. 1eik
      1. chain a [39751]
  2. Archaeon Methanococcus jannaschii [TaxId: 2190] [55291] (1)
    1. 1hmj
      probably incorrect structure
      1. chain a [39752]
2. Eukaryotic RPB5 C-terminal domain [55292]
  1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [55293] (26)
    SQ P20434; part of multichain biological unit
    1. 1dzf
      1. region a:144-215 [39753]
    2. 1twf
      complexed with mn, utp, zn
      1. region e:144-215 [112730]
    3. 1i50
      complexed with mn, zn
      1. region e:144-215 [61759]
    4. 1k83
      complexed with ilx, mn, trx, zn
      1. region e:144-215 [68280]
    5. 1i3q
      complexed with mg, zn
      1. region e:144-215 [61612]
    6. 2nvq
      automatically matched to d1dzfa2
      complexed with dut, mg, zn
      1. region e:144-215 [138639]
    7. 1twc
      complexed with gtp, mn, zn
      1. region e:144-215 [112716]
    8. 1twa
      complexed with atp, mn, zn
      1. region e:144-215 [112701]
    9. 1i6h
      complexed with mg, zn
      1. region e:144-215 [61836]
    10. 1twh
      complexed with atp, mn, zn
      1. region e:144-215 [112756]
    11. 1twg
      complexed with ctp, mn, zn
      1. region e:144-215 [112743]
    12. 2nvy
      automatically matched to d1dzfa2
      complexed with mn, zn
      1. region e:144-215 [138685]
    13. 2e2i
      automatically matched to d1dzfa2
      complexed with dgt, mg, zn
      1. region e:144-215 [131999]
    14. 2e2j
      automatically matched to d1dzfa2
      complexed with g2p, mg, zn
      1. region e:144-215 [132012]
    15. 2b63
      automatically matched to d1dzfa2
      complexed with 5bu, mg, zn
      1. region e:144-215 [127923]
    16. 2ja7
      automatically matched to d1dzfa2
      complexed with bru, mg, tt, zn
      1. region e:144-215 [138196]
    17. 2ja7
      automatically matched to d1dzfa2
      complexed with bru, mg, tt, zn
      1. region q:144-215 [138212]
    18. 2nvx
      automatically matched to d1dzfa2
      complexed with dut, mg, zn
      1. region e:144-215 [138672]
    19. 2nvt
      automatically matched to d1dzfa2
      complexed with g2p, mg, zn
      1. region e:144-215 [138652]
    20. 2ja5
      automatically matched to d1dzfa2
      complexed with bru, mg, zn
      1. region e:144-215 [138164]
    21. 2ja8
      automatically matched to d1dzfa2
      complexed with bru, mg, tt, zn
      1. region e:144-215 [138228]
    22. 2b8k
      automatically matched to d1dzfa2
      complexed with zn
      1. region e:144-215 [128082]
    23. 2ja6
      automatically matched to d1dzfa2
      complexed with bru, mg, tt, zn
      1. region e:144-215 [138180]
    24. 2yu9
      automatically matched to d1dzfa2
      complexed with mg, utp, zn
      1. region e:144-215 [140069]
    25. 2e2h
      automatically matched to d1dzfa2
      complexed with gtp, mg, zn
      1. region e:144-215 [131986]
    26. 2nvz
      automatically matched to d1dzfa2
      complexed with mg, utp, zn
      1. region e:144-215 [138698]