Structural Classification of Proteins
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Fold: RPB5-like RNA polymerase subunit

core: beta-alpha-beta-alpha-beta(2); 2 layers, alpha/beta

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: RPB5-like RNA polymerase subunit [55286]
    core: beta-alpha-beta-alpha-beta(2); 2 layers, alpha/beta

Superfamilies:

  1. RPB5-like RNA polymerase subunit [55287] (1)
    link to SUPERFAMILY database - Superfamily
    1. RPB5 [55288] (3)
      1. RNA polymerase subunit RBP5 (RNA polymerase subunit H) [55289]
        1. Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262] [55290] (1)
          1. 1eik picpic
            1. chain a [39751] picpiclink
        2. Archaeon Methanococcus jannaschii [TaxId: 2190] [55291] (1)
          1. 1hmj picpic
            probably incorrect structure
            1. chain a [39752] picpiclink
      2. Eukaryotic RPB5 C-terminal domain [55292]
        1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [55293] (26)
          SQ P20434; part of multichain biological unit
          1. 1dzf picpicxref
            1. region a:144-215 [39753] picpiclink
          2. 1twf picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mn, utp, zn
            1. region e:144-215 [112730] picpiclink
          3. 1i50 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mn, zn
            1. region e:144-215 [61759] picpiclink
          4. 1k83 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with ilx, mn, trx, zn
            1. region e:144-215 [68280] picpiclink
          5. 1i3q picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, zn
            1. region e:144-215 [61612] picpiclink
          6. 2nvq picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1dzfa2
            complexed with dut, mg, zn
            1. region e:144-215 [138639] picpiclink
          7. 1twc picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with gtp, mn, zn
            1. region e:144-215 [112716] picpiclink
          8. 1twa picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with atp, mn, zn
            1. region e:144-215 [112701] picpiclink
          9. 1i6h picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, zn
            1. region e:144-215 [61836] picpiclink
          10. 1twh picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with atp, mn, zn
            1. region e:144-215 [112756] picpiclink
          11. 1twg picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with ctp, mn, zn
            1. region e:144-215 [112743] picpiclink
          12. 2nvy picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1dzfa2
            complexed with mn, zn
            1. region e:144-215 [138685] picpiclink
          13. 2e2i picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1dzfa2
            complexed with dgt, mg, zn
            1. region e:144-215 [131999] picpiclink
          14. 2e2j picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1dzfa2
            complexed with g2p, mg, zn
            1. region e:144-215 [132012] picpiclink
          15. 2b63 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1dzfa2
            complexed with 5bu, mg, zn
            1. region e:144-215 [127923] picpiclink
          16. 2ja7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1dzfa2
            complexed with bru, mg, tt, zn
            1. region e:144-215 [138196] picpiclink
          17. 2ja7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1dzfa2
            complexed with bru, mg, tt, zn
            1. region q:144-215 [138212] picpiclink
          18. 2nvx picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1dzfa2
            complexed with dut, mg, zn
            1. region e:144-215 [138672] picpiclink
          19. 2nvt picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1dzfa2
            complexed with g2p, mg, zn
            1. region e:144-215 [138652] picpiclink
          20. 2ja5 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1dzfa2
            complexed with bru, mg, zn
            1. region e:144-215 [138164] picpiclink
          21. 2ja8 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1dzfa2
            complexed with bru, mg, tt, zn
            1. region e:144-215 [138228] picpiclink
          22. 2b8k picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1dzfa2
            complexed with zn
            1. region e:144-215 [128082] picpiclink
          23. 2ja6 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1dzfa2
            complexed with bru, mg, tt, zn
            1. region e:144-215 [138180] picpiclink
          24. 2yu9 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1dzfa2
            complexed with mg, utp, zn
            1. region e:144-215 [140069] picpiclink
          25. 2e2h picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1dzfa2
            complexed with gtp, mg, zn
            1. region e:144-215 [131986] picpiclink
          26. 2nvz picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1dzfa2
            complexed with mg, utp, zn
            1. region e:144-215 [138698] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk