Structural Classification of Proteins
home mail help root up expand collapse

Superfamily: Thiamin diphosphate-binding fold (THDP-binding)

there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules
two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules
link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Thiamin diphosphate-binding fold (THDP-binding) [52517]
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465
  4. Superfamily: Thiamin diphosphate-binding fold (THDP-binding) [52518]
    there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules
    two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules
    link to SUPERFAMILY database - Superfamily

Families:

  1. Pyruvate oxidase and decarboxylase Pyr module [88724] (12) picpic
    the N-terminal, Pyr module is separated from the C-terminal, PP module by an alpha/beta domain of Rossmann-like topology
  2. TK-like Pyr module [88735] (5) picpic
    different order of the modules, PP module is N-terminal, Pyr module is next to it followed by a Rossmann-like domain
  3. Branched-chain alpha-keto acid dehydrogenase Pyr module [88741] (6) picpic
    parent family to TK and PFOR
    heterodimeric protein related to TK; alpha-subunit is the PP module and the N-terminal domain of beta-subunit is the Pyr module
  4. PFOR Pyr module [88746] (1) picpic
    domains VI, I and II are arranged in the same way as the TK PP, Pyr and C domains
  5. Pyruvate oxidase and decarboxylase PP module [88749] (12) picpic
    the N-terminal, Pyr module is separated from the C-terminal, PP module by an alpa/beta domain of Rossmann-like topology
  6. TK-like PP module [88760] (5) picpic
    different order of the modules, PP module is N-terminal, Pyr module is next to it followed by a Rossmann-like domain
  7. Branched-chain alpha-keto acid dehydrogenase PP module [88766] (5) picpic
    parent family to TK and PFOR
    heterodimeric protein related to TK; alpha-subunit is the PP module and the N-terminal domain of beta-subunit is the Pyr module
  8. PFOR PP module [88771] (1) picpic
    domains VI, I and II are arranged in the same way as the TK PP, Pyr and C domains

Enter search key:

MRC
site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk