Structural Classification of Proteins
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Protein: Benzoylformate decarboxylase from Pseudomonas putida [TaxId: 303]

SQ P20906

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Thiamin diphosphate-binding fold (THDP-binding) [52517]
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465
  4. Superfamily: Thiamin diphosphate-binding fold (THDP-binding) [52518]
    there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules
    two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules
    link to SUPERFAMILY database - Superfamily
  5. Family: Pyruvate oxidase and decarboxylase Pyr module [88724]
    the N-terminal, Pyr module is separated from the C-terminal, PP module by an alpha/beta domain of Rossmann-like topology
  6. Protein: Benzoylformate decarboxylase [88731]
  7. Species: Pseudomonas putida [TaxId: 303] [88732]
    SQ P20906

PDB Entry Domains:

  1. 1q6z picpicxrefxref
    complexed with ca, mg, tdp; mutant
    1. region a:2-181 [111656] picpiclink
  2. 2fn3 picpicxrefxref
    automatically matched to d1bfd_2
    complexed with ca, mg, tzd; mutant
    1. region a:2-181 [133804] picpiclink
  3. 1pi3 picpicxrefxref
    complexed with ca, mg, tdp; mutant
    1. region a:2-181 [111634] picpiclink
  4. 1po7 picpicxrefxref
    complexed with ca, mg, tdp; mutant
    1. region a:2-181 [111637] picpiclink
  5. 1yno picpicxrefxref
    automatically matched to d1bfd_2
    complexed with ca, mg, tzd
    1. region a:2-181 [123748] picpiclink
  6. 2fwn picpicxrefxref
    automatically matched to d1bfd_2
    complexed with ca, mg, tdp
    1. region a:2-181 [134250] picpiclink
  7. 1bfd picpicxrefxref
    complexed with ca, mg, tpp
    1. region a:2-181 [31801] picpiclink
  8. 2v3w picpicxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1bfda2
    complexed with mg, so4, tpp; mutant
    1. region a:2-181 [152466] picpiclink
  9. 2v3w picpicxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1bfda2
    complexed with mg, so4, tpp; mutant
    1. region b:2-181 [152469] picpiclink
  10. 2v3w picpicxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1bfda2
    complexed with mg, so4, tpp; mutant
    1. region c:2-181 [152472] picpiclink
  11. 2v3w picpicxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1bfda2
    complexed with mg, so4, tpp; mutant
    1. region d:2-181 [152475] picpiclink
  12. 1mcz picpicxrefxref
    complexed with mg, rmn, tdp
    1. region a:2-181 [78953] picpiclink
    2. region b:2-181 [78956] picpiclink
    3. region c:2-181 [78959] picpiclink
    4. region d:2-181 [78962] picpiclink
    5. region e:2-181 [78965] picpiclink
    6. region f:2-181 [78968] picpiclink
    7. region g:2-181 [78971] picpiclink
    8. region h:2-181 [78974] picpiclink
    9. region i:2-181 [78977] picpiclink
    10. region j:2-181 [78980] picpiclink
    11. region k:2-181 [78983] picpiclink
    12. region l:2-181 [78986] picpiclink
    13. region m:2-181 [78989] picpiclink
    14. region n:2-181 [78992] picpiclink
    15. region o:2-181 [78995] picpiclink
    16. region p:2-181 [78998] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk