Structural Classification of Proteins
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Protein: Benzoylformate decarboxylase from Pseudomonas putida [TaxId: 303]

SQ P20906

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Thiamin diphosphate-binding fold (THDP-binding) [52517]
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465
  4. Superfamily: Thiamin diphosphate-binding fold (THDP-binding) [52518]
    there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules
    two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules
    link to SUPERFAMILY database - Superfamily
  5. Family: Pyruvate oxidase and decarboxylase PP module [88749]
    the N-terminal, Pyr module is separated from the C-terminal, PP module by an alpa/beta domain of Rossmann-like topology
  6. Protein: Benzoylformate decarboxylase [88756]
  7. Species: Pseudomonas putida [TaxId: 303] [88757]
    SQ P20906

PDB Entry Domains:

  1. 1q6z picpicxrefxref
    complexed with ca, mg, tdp; mutant
    1. region a:342-524 [111657] picpiclink
  2. 2fn3 picpicxrefxref
    automatically matched to d1mcza3
    complexed with ca, mg, tzd; mutant
    1. region a:342-525 [133805] picpiclink
  3. 1pi3 picpicxrefxref
    complexed with ca, mg, tdp; mutant
    1. region a:342-524 [111635] picpiclink
  4. 1po7 picpicxrefxref
    complexed with ca, mg, tdp; mutant
    1. region a:342-524 [111638] picpiclink
  5. 1yno picpicxrefxref
    automatically matched to d1mcza3
    complexed with ca, mg, tzd
    1. region a:342-525 [123749] picpiclink
  6. 2fwn picpicxrefxref
    automatically matched to d1mcza3
    complexed with ca, mg, tdp
    1. region a:342-525 [134251] picpiclink
  7. 1bfd picpicxrefxref
    complexed with ca, mg, tpp
    1. region a:342-524 [31802] picpiclink
  8. 2v3w picpicxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1mcza3
    complexed with mg, so4, tpp; mutant
    1. region a:342-525 [152467] picpiclink
  9. 2v3w picpicxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1mcza3
    complexed with mg, so4, tpp; mutant
    1. region b:342-525 [152470] picpiclink
  10. 2v3w picpicxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1mcza3
    complexed with mg, so4, tpp; mutant
    1. region c:342-525 [152473] picpiclink
  11. 2v3w picpicxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1mcza3
    complexed with mg, so4, tpp; mutant
    1. region d:342-525 [152476] picpiclink
  12. 1mcz picpicxrefxref
    complexed with mg, rmn, tdp
    1. region a:342-525 [78954] picpiclink
    2. region b:342-525 [78957] picpiclink
    3. region c:342-525 [78960] picpiclink
    4. region d:342-525 [78963] picpiclink
    5. region e:342-525 [78966] picpiclink
    6. region f:342-525 [78969] picpiclink
    7. region g:342-525 [78972] picpiclink
    8. region h:342-525 [78975] picpiclink
    9. region i:342-525 [78978] picpiclink
    10. region j:342-525 [78981] picpiclink
    11. region k:342-525 [78984] picpiclink
    12. region l:342-525 [78987] picpiclink
    13. region m:342-525 [78990] picpiclink
    14. region n:342-525 [78993] picpiclink
    15. region o:342-525 [78996] picpiclink
    16. region p:342-525 [78999] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk