Structural Classification of Proteins
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Family: RNA-polymerase beta-prime

Lineage:

  1. Root: scop
  2. Class: Multi-domain proteins (alpha and beta) [56572]
    Folds consisting of two or more domains belonging to different classes
  3. Fold: beta and beta-prime subunits of DNA dependent RNA-polymerase [64483]
    Multidomain subunits of complex domain organization
  4. Superfamily: beta and beta-prime subunits of DNA dependent RNA-polymerase [64484]
    The catalytic site is formed by the association of two double-psi beta-barrel domains, one from each subunit
    link to SUPERFAMILY database - Superfamily
  5. Family: RNA-polymerase beta-prime [64490]

Protein Domains:

  1. RBP1 [64486]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [64487] (25)
      SQ P04050; part of multichain biological unit
      1. 1twf picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mn, utp, zn
        1. chain a [112725] picpiclink
      2. 1i50 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mn, zn
        1. chain a [61754] picpiclink
      3. 1k83 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with ilx, mn, trx, zn
        1. chain a [68275] picpiclink
      4. 1i3q picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mg, zn
        1. chain a [61607] picpiclink
      5. 2nvq picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i50a_
        complexed with dut, mg, zn
        1. region a:3-1445 [138634] picpiclink
      6. 1twc picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with gtp, mn, zn
        1. chain a [112711] picpiclink
      7. 1twa picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with atp, mn, zn
        1. chain a [112696] picpiclink
      8. 1i6h picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mg, zn
        1. chain a [61831] picpiclink
      9. 1twh picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with atp, mn, zn
        1. chain a [112751] picpiclink
      10. 1twg picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with ctp, mn, zn
        1. chain a [112738] picpiclink
      11. 2nvy picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i50a_
        complexed with mn, zn
        1. region a:2-1450 [138680] picpiclink
      12. 2e2i picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i50a_
        complexed with dgt, mg, zn
        1. region a:3-1449 [131994] picpiclink
      13. 2e2j picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i50a_
        complexed with g2p, mg, zn
        1. region a:3-1445 [132007] picpiclink
      14. 2b63 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i50a_
        complexed with 5bu, mg, zn
        1. region a:2-1450 [127917] picpiclink
      15. 2ja7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i50a_
        complexed with bru, mg, tt, zn
        1. region a:2-1450 [138190] picpiclink
      16. 2ja7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i50a_
        complexed with bru, mg, tt, zn
        1. region m:2-1450 [138206] picpiclink
      17. 2nvx picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i50a_
        complexed with dut, mg, zn
        1. region a:3-1445 [138667] picpiclink
      18. 2nvt picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i50a_
        complexed with g2p, mg, zn
        1. region a:3-1450 [138647] picpiclink
      19. 2ja5 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i50a_
        complexed with bru, mg, zn
        1. region a:2-1450 [138158] picpiclink
      20. 2ja8 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i50a_
        complexed with bru, mg, tt, zn
        1. region a:2-1450 [138222] picpiclink
      21. 2b8k picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i50a_
        complexed with zn
        1. region a:2-1450 [128076] picpiclink
      22. 2ja6 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i50a_
        complexed with bru, mg, tt, zn
        1. region a:2-1450 [138174] picpiclink
      23. 2yu9 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i50a_
        complexed with mg, utp, zn
        1. region a:3-1450 [140064] picpiclink
      24. 2e2h picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i50a_
        complexed with gtp, mg, zn
        1. region a:2-1445 [131981] picpiclink
      25. 2nvz picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i50a_
        complexed with mg, utp, zn
        1. region a:2-1445 [138693] picpiclink
  2. RNA-polymerase beta-prime [64493]
    1. Thermus aquaticus [TaxId: 271] [64494] (4)
      1. 1ynj picpicxrefxrefxrefxrefxrefxref
        complexed with srn, zn
        1. region d:3-1240 [144704] picpiclink
      2. 1i6v picpicxrefxrefxrefxref
        complexed with mg, rfp, zn
        1. chain d [61857] picpiclink
      3. 1ynn picpicxrefxrefxrefxrefxrefxref
        automatically matched to 1YNJ D:3-1240
        complexed with rfp, zn
        1. region d:3-1240 [144706] picpiclink
      4. 2gho picpicxrefxrefxrefxrefxref
        1. region d:3-1501 [145197] picpiclink
    2. Thermus thermophilus [TaxId: 274] [75610] (24)
      SQ Q8RQE8; part of multichain biological unit
      1. 1smy picpicxrefxrefxrefxrefxrefxrefxref
        complexed with g4p, mg, zn
        1. chain d [105779] picpiclink
        2. chain n [105789] picpiclink
      2. 2a6h picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7d_
        complexed with mg, std, zn
        1. region d:2-1505 [126265] picpiclink
      3. 2a6h picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7d_
        complexed with mg, std, zn
        1. region n:2-1505 [126275] picpiclink
      4. 2a69 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7d_
        complexed with mg, rpt, zn
        1. region d:2-1505 [126216] picpiclink
      5. 2a69 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7d_
        complexed with mg, rpt, zn
        1. region n:2-1505 [126226] picpiclink
      6. 2a68 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7d_
        complexed with mg, rbt, zn
        1. region d:2-1505 [126196] picpiclink
      7. 2a68 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7d_
        complexed with mg, rbt, zn
        1. region n:2-1505 [126206] picpiclink
      8. 2be5 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7d_
        complexed with mg, tgt, zn
        1. region d:2-1505 [128356] picpiclink
      9. 2be5 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7d_
        complexed with mg, tgt, zn
        1. region n:2-1505 [128366] picpiclink
      10. 1iw7 picpicxrefxrefxrefxrefxrefxrefxref
        complexed with mg, pb
        1. chain d [71475] picpiclink
        2. chain n [71483] picpiclink
      11. 2o5i picpicxrefxrefxref
        automatically matched to d1iw7d_
        complexed with mg, zn
        1. region d:2-1505 [148601] picpiclink
      12. 2o5i picpicxrefxrefxref
        automatically matched to d1iw7d_
        complexed with mg, zn
        1. region n:2-1505 [148604] picpiclink
      13. 3dxj picpicxrefxrefxrefxref
        automatically matched to d1iw7d_
        complexed with mg, mpd, ne6, po4, zn
        1. region d:2-1505 [157928] picpiclink
      14. 3dxj picpicxrefxrefxrefxref
        automatically matched to d1iw7d_
        complexed with mg, mpd, ne6, po4, zn
        1. region n:2-1505 [157931] picpiclink
      15. 2a6e picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7d_
        complexed with mg, zn
        1. region d:2-1505 [126245] picpiclink
      16. 2a6e picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7d_
        complexed with mg, zn
        1. region n:2-1505 [126255] picpiclink
      17. 2o5j picpicxrefxref
        automatically matched to d1iw7d_
        complexed with apc, mg, zn
        1. region d:2-1505 [148606] picpiclink
      18. 2o5j picpicxrefxref
        automatically matched to d1iw7d_
        complexed with apc, mg, zn
        1. region n:2-1505 [148608] picpiclink
      19. 2ppb picpicxrefxref
        automatically matched to d1iw7d_
        complexed with apc, mg, std, zn
        1. region d:2-1505 [149754] picpiclink
      20. 2ppb picpicxrefxref
        automatically matched to d1iw7d_
        complexed with apc, mg, std, zn
        1. region n:2-1505 [149756] picpiclink
      21. 1zyr picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7d_
        complexed with mg, std, zn
        1. region d:2-1505 [125854] picpiclink
      22. 1zyr picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7d_
        complexed with mg, std, zn
        1. region n:2-1505 [125864] picpiclink
      23. 2cw0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7d_
        complexed with mg, zn
        1. region d:2-1505 [130903] picpiclink
      24. 2cw0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7d_
        complexed with mg, zn
        1. region n:2-1505 [130913] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk