Structural Classification of Proteins
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Family: RNA-polymerase beta

Lineage:

  1. Root: scop
  2. Class: Multi-domain proteins (alpha and beta) [56572]
    Folds consisting of two or more domains belonging to different classes
  3. Fold: beta and beta-prime subunits of DNA dependent RNA-polymerase [64483]
    Multidomain subunits of complex domain organization
  4. Superfamily: beta and beta-prime subunits of DNA dependent RNA-polymerase [64484]
    The catalytic site is formed by the association of two double-psi beta-barrel domains, one from each subunit
    link to SUPERFAMILY database - Superfamily
  5. Family: RNA-polymerase beta [64485]

Protein Domains:

  1. RBP2 [64491]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [64492] (30)
      SQ P08518; part of multichain biological unit
      1. 1twf picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mn, utp, zn
        1. chain b [112726] picpiclink
      2. 1i50 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mn, zn
        1. chain b [61755] picpiclink
      3. 1k83 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with ilx, mn, trx, zn
        1. chain b [68276] picpiclink
      4. 3cqz picpicxrefxrefxrefxrefxrefxref
        automatically matched to d1i50b_
        complexed with ilx, trx, zn
        1. region b:20-1222 [156930] picpiclink
      5. 1i3q picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mg, zn
        1. chain b [61608] picpiclink
      6. 2nvq picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i50b_
        complexed with dut, mg, zn
        1. region b:20-1224 [138635] picpiclink
      7. 1twc picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with gtp, mn, zn
        1. chain b [112712] picpiclink
      8. 1twa picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with atp, mn, zn
        1. chain b [112697] picpiclink
      9. 1i6h picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mg, zn
        1. chain b [61832] picpiclink
      10. 1twh picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with atp, mn, zn
        1. chain b [112752] picpiclink
      11. 2r7z picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i50b_
        complexed with cpt, mg, zn
        1. region b:20-1224 [151659] picpiclink
      12. 2r92 picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i50b_
        complexed with mg, zn
        1. region b:20-1224 [151746] picpiclink
      13. 1twg picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with ctp, mn, zn
        1. chain b [112739] picpiclink
      14. 2nvy picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i50b_
        complexed with mn, zn
        1. region b:20-1224 [138681] picpiclink
      15. 2r93 picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i50b_
        complexed with mg, zn
        1. region b:20-1224 [151755] picpiclink
      16. 2e2i picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i50b_
        complexed with dgt, mg, zn
        1. region b:20-1224 [131995] picpiclink
      17. 2vum picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i50b_
        complexed with bru, ilx, mg, trx, zn
        1. region b:20-1224 [153549] picpiclink
      18. 2e2j picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i50b_
        complexed with g2p, mg, zn
        1. region b:20-1222 [132008] picpiclink
      19. 2b63 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i50b_
        complexed with 5bu, mg, zn
        1. region b:20-1224 [127918] picpiclink
      20. 2ja7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i50b_
        complexed with bru, mg, tt, zn
        1. region b:20-1224 [138191] picpiclink
      21. 2ja7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i50b_
        complexed with bru, mg, tt, zn
        1. region n:20-1224 [138207] picpiclink
      22. 2nvx picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i50b_
        complexed with dut, mg, zn
        1. region b:20-1222 [138668] picpiclink
      23. 2nvt picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i50b_
        complexed with g2p, mg, zn
        1. region b:20-1224 [138648] picpiclink
      24. 2ja5 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i50b_
        complexed with bru, mg, zn
        1. region b:20-1224 [138159] picpiclink
      25. 2ja8 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i50b_
        complexed with bru, mg, tt, zn
        1. region b:20-1224 [138223] picpiclink
      26. 2b8k picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i50b_
        complexed with zn
        1. region b:20-1224 [128077] picpiclink
      27. 2ja6 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i50b_
        complexed with bru, mg, tt, zn
        1. region b:20-1224 [138175] picpiclink
      28. 2yu9 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i50b_
        complexed with mg, utp, zn
        1. region b:20-1224 [140065] picpiclink
      29. 2e2h picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i50b_
        complexed with gtp, mg, zn
        1. region b:20-1223 [131982] picpiclink
      30. 2nvz picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i50b_
        complexed with mg, utp, zn
        1. region b:20-1223 [138694] picpiclink
  2. RNA-polymerase beta [64488]
    1. Thermus aquaticus [TaxId: 271] [64489] (4)
      1. 1ynj picpicxrefxrefxrefxrefxrefxref
        complexed with srn, zn
        1. region c:1-1114 [144703] picpiclink
      2. 1i6v picpicxrefxrefxrefxref
        complexed with mg, rfp, zn
        1. chain c [61856] picpiclink
      3. 1ynn picpicxrefxrefxrefxrefxrefxref
        automatically matched to 1YNJ C:1-1114
        complexed with rfp, zn
        1. region c:1-1114 [144705] picpiclink
      4. 2gho picpicxrefxrefxrefxrefxref
        automatically matched to 1YNJ C:1-1114
        1. region c:1-1114 [145196] picpiclink
    2. Thermus thermophilus [TaxId: 274] [75609] (24)
      SQ Q8RQE9; part of multichain biological unit
      1. 1smy picpicxrefxrefxrefxrefxrefxrefxref
        complexed with g4p, mg, zn
        1. chain c [105778] picpiclink
        2. chain m [105788] picpiclink
      2. 2a6h picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7c_
        complexed with mg, std, zn
        1. region c:1-1119 [126264] picpiclink
      3. 2a6h picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7c_
        complexed with mg, std, zn
        1. region m:1-1119 [126274] picpiclink
      4. 2a69 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7c_
        complexed with mg, rpt, zn
        1. region c:1-1119 [126215] picpiclink
      5. 2a69 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7c_
        complexed with mg, rpt, zn
        1. region m:1-1119 [126225] picpiclink
      6. 2a68 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7c_
        complexed with mg, rbt, zn
        1. region c:1-1119 [126195] picpiclink
      7. 2a68 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7c_
        complexed with mg, rbt, zn
        1. region m:1-1119 [126205] picpiclink
      8. 2be5 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7c_
        complexed with mg, tgt, zn
        1. region c:1-1119 [128355] picpiclink
      9. 2be5 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7c_
        complexed with mg, tgt, zn
        1. region m:1-1119 [128365] picpiclink
      10. 1iw7 picpicxrefxrefxrefxrefxrefxrefxref
        complexed with mg, pb
        1. chain c [71474] picpiclink
        2. chain m [71482] picpiclink
      11. 2o5i picpicxrefxrefxref
        automatically matched to d1iw7c_
        complexed with mg, zn
        1. region c:1-1119 [148600] picpiclink
      12. 2o5i picpicxrefxrefxref
        automatically matched to d1iw7c_
        complexed with mg, zn
        1. region m:1-1119 [148603] picpiclink
      13. 3dxj picpicxrefxrefxrefxref
        automatically matched to d1iw7c_
        complexed with mg, mpd, ne6, po4, zn
        1. region c:1-1119 [157927] picpiclink
      14. 3dxj picpicxrefxrefxrefxref
        automatically matched to d1iw7c_
        complexed with mg, mpd, ne6, po4, zn
        1. region m:1-1119 [157930] picpiclink
      15. 2a6e picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7c_
        complexed with mg, zn
        1. region c:1-1119 [126244] picpiclink
      16. 2a6e picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7c_
        complexed with mg, zn
        1. region m:1-1119 [126254] picpiclink
      17. 2o5j picpicxrefxref
        automatically matched to d1iw7c_
        complexed with apc, mg, zn
        1. region c:1-1119 [148605] picpiclink
      18. 2o5j picpicxrefxref
        automatically matched to d1iw7c_
        complexed with apc, mg, zn
        1. region m:1-1119 [148607] picpiclink
      19. 2ppb picpicxrefxref
        automatically matched to d1iw7c_
        complexed with apc, mg, std, zn
        1. region c:1-1119 [149753] picpiclink
      20. 2ppb picpicxrefxref
        automatically matched to d1iw7c_
        complexed with apc, mg, std, zn
        1. region m:1-1119 [149755] picpiclink
      21. 1zyr picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7c_
        complexed with mg, std, zn
        1. region c:1-1119 [125853] picpiclink
      22. 1zyr picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7c_
        complexed with mg, std, zn
        1. region m:1-1119 [125863] picpiclink
      23. 2cw0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7c_
        complexed with mg, zn
        1. region c:1-1119 [130902] picpiclink
      24. 2cw0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1iw7c_
        complexed with mg, zn
        1. region m:1-1119 [130912] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk