Structural Classification of Proteins

Superfamily: beta and beta-prime subunits of DNA dependent RNA-polymerase

: The catalytic site is formed by the association of two double-psi beta-barrel domains, one from each subunit
uperfamily

Lineage:

Root: scop
Class: Multi-domain proteins (alpha and beta) [56572]
Folds consisting of two or more domains belonging to different classes
Fold: beta and beta-prime subunits of DNA dependent RNA-polymerase [64483]
Multidomain subunits of complex domain organization
Superfamily: beta and beta-prime subunits of DNA dependent RNA-polymerase [64484]
The catalytic site is formed by the association of two double-psi beta-barrel domains, one from each subunit
uperfamily

Families:

RNA-polymerase beta [64485] (3)
1. RBP2 [64491]
  1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [64492] (30)
    SQ P08518; part of multichain biological unit
    1. 1twf
      complexed with mn, utp, zn
      1. chain b [112726]
    2. 1i50
      complexed with mn, zn
      1. chain b [61755]
    3. 1k83
      complexed with ilx, mn, trx, zn
      1. chain b [68276]
    4. 3cqz
      automatically matched to d1i50b_
      complexed with ilx, trx, zn
      1. region b:20-1222 [156930]
    5. 1i3q
      complexed with mg, zn
      1. chain b [61608]
    6. 2nvq
      automatically matched to d1i50b_
      complexed with dut, mg, zn
      1. region b:20-1224 [138635]
    7. 1twc
      complexed with gtp, mn, zn
      1. chain b [112712]
    8. 1twa
      complexed with atp, mn, zn
      1. chain b [112697]
    9. 1i6h
      complexed with mg, zn
      1. chain b [61832]
    10. 1twh
      complexed with atp, mn, zn
      1. chain b [112752]
    11. 2r7z
      automatically matched to d1i50b_
      complexed with cpt, mg, zn
      1. region b:20-1224 [151659]
    12. 2r92
      automatically matched to d1i50b_
      complexed with mg, zn
      1. region b:20-1224 [151746]
    13. 1twg
      complexed with ctp, mn, zn
      1. chain b [112739]
    14. 2nvy
      automatically matched to d1i50b_
      complexed with mn, zn
      1. region b:20-1224 [138681]
    15. 2r93
      automatically matched to d1i50b_
      complexed with mg, zn
      1. region b:20-1224 [151755]
    16. 2e2i
      automatically matched to d1i50b_
      complexed with dgt, mg, zn
      1. region b:20-1224 [131995]
    17. 2vum
      automatically matched to d1i50b_
      complexed with bru, ilx, mg, trx, zn
      1. region b:20-1224 [153549]
    18. 2e2j
      automatically matched to d1i50b_
      complexed with g2p, mg, zn
      1. region b:20-1222 [132008]
    19. 2b63
      automatically matched to d1i50b_
      complexed with 5bu, mg, zn
      1. region b:20-1224 [127918]
    20. 2ja7
      automatically matched to d1i50b_
      complexed with bru, mg, tt, zn
      1. region b:20-1224 [138191]
    21. 2ja7
      automatically matched to d1i50b_
      complexed with bru, mg, tt, zn
      1. region n:20-1224 [138207]
    22. 2nvx
      automatically matched to d1i50b_
      complexed with dut, mg, zn
      1. region b:20-1222 [138668]
    23. 2nvt
      automatically matched to d1i50b_
      complexed with g2p, mg, zn
      1. region b:20-1224 [138648]
    24. 2ja5
      automatically matched to d1i50b_
      complexed with bru, mg, zn
      1. region b:20-1224 [138159]
    25. 2ja8
      automatically matched to d1i50b_
      complexed with bru, mg, tt, zn
      1. region b:20-1224 [138223]
    26. 2b8k
      automatically matched to d1i50b_
      complexed with zn
      1. region b:20-1224 [128077]
    27. 2ja6
      automatically matched to d1i50b_
      complexed with bru, mg, tt, zn
      1. region b:20-1224 [138175]
    28. 2yu9
      automatically matched to d1i50b_
      complexed with mg, utp, zn
      1. region b:20-1224 [140065]
    29. 2e2h
      automatically matched to d1i50b_
      complexed with gtp, mg, zn
      1. region b:20-1223 [131982]
    30. 2nvz
      automatically matched to d1i50b_
      complexed with mg, utp, zn
      1. region b:20-1223 [138694]
2. RNA-polymerase beta [64488]
  1. Thermus aquaticus [TaxId: 271] [64489] (4)
    1. 1ynj
      complexed with srn, zn
      1. region c:1-1114 [144703]
    2. 1i6v
      complexed with mg, rfp, zn
      1. chain c [61856]
    3. 1ynn
      automatically matched to 1YNJ C:1-1114
      complexed with rfp, zn
      1. region c:1-1114 [144705]
    4. 2gho
      automatically matched to 1YNJ C:1-1114
      1. region c:1-1114 [145196]
  2. Thermus thermophilus [TaxId: 274] [75609] (24)
    SQ Q8RQE9; part of multichain biological unit
    1. 1smy
      complexed with g4p, mg, zn
      1. chain c [105778]
      2. chain m [105788]
    2. 2a6h
      automatically matched to d1iw7c_
      complexed with mg, std, zn
      1. region c:1-1119 [126264]
    3. 2a6h
      automatically matched to d1iw7c_
      complexed with mg, std, zn
      1. region m:1-1119 [126274]
    4. 2a69
      automatically matched to d1iw7c_
      complexed with mg, rpt, zn
      1. region c:1-1119 [126215]
    5. 2a69
      automatically matched to d1iw7c_
      complexed with mg, rpt, zn
      1. region m:1-1119 [126225]
    6. 2a68
      automatically matched to d1iw7c_
      complexed with mg, rbt, zn
      1. region c:1-1119 [126195]
    7. 2a68
      automatically matched to d1iw7c_
      complexed with mg, rbt, zn
      1. region m:1-1119 [126205]
    8. 2be5
      automatically matched to d1iw7c_
      complexed with mg, tgt, zn
      1. region c:1-1119 [128355]
    9. 2be5
      automatically matched to d1iw7c_
      complexed with mg, tgt, zn
      1. region m:1-1119 [128365]
    10. 1iw7
      complexed with mg, pb
      1. chain c [71474]
      2. chain m [71482]
    11. 2o5i
      automatically matched to d1iw7c_
      complexed with mg, zn
      1. region c:1-1119 [148600]
    12. 2o5i
      automatically matched to d1iw7c_
      complexed with mg, zn
      1. region m:1-1119 [148603]
    13. 3dxj
      automatically matched to d1iw7c_
      complexed with mg, mpd, ne6, po4, zn
      1. region c:1-1119 [157927]
    14. 3dxj
      automatically matched to d1iw7c_
      complexed with mg, mpd, ne6, po4, zn
      1. region m:1-1119 [157930]
    15. 2a6e
      automatically matched to d1iw7c_
      complexed with mg, zn
      1. region c:1-1119 [126244]
    16. 2a6e
      automatically matched to d1iw7c_
      complexed with mg, zn
      1. region m:1-1119 [126254]
    17. 2o5j
      automatically matched to d1iw7c_
      complexed with apc, mg, zn
      1. region c:1-1119 [148605]
    18. 2o5j
      automatically matched to d1iw7c_
      complexed with apc, mg, zn
      1. region m:1-1119 [148607]
    19. 2ppb
      automatically matched to d1iw7c_
      complexed with apc, mg, std, zn
      1. region c:1-1119 [149753]
    20. 2ppb
      automatically matched to d1iw7c_
      complexed with apc, mg, std, zn
      1. region m:1-1119 [149755]
    21. 1zyr
      automatically matched to d1iw7c_
      complexed with mg, std, zn
      1. region c:1-1119 [125853]
    22. 1zyr
      automatically matched to d1iw7c_
      complexed with mg, std, zn
      1. region m:1-1119 [125863]
    23. 2cw0
      automatically matched to d1iw7c_
      complexed with mg, zn
      1. region c:1-1119 [130902]
    24. 2cw0
      automatically matched to d1iw7c_
      complexed with mg, zn
      1. region m:1-1119 [130912]
RNA-polymerase beta-prime [64490] (3)
1. RBP1 [64486]
  1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [64487] (25)
    SQ P04050; part of multichain biological unit
    1. 1twf
      complexed with mn, utp, zn
      1. chain a [112725]
    2. 1i50
      complexed with mn, zn
      1. chain a [61754]
    3. 1k83
      complexed with ilx, mn, trx, zn
      1. chain a [68275]
    4. 1i3q
      complexed with mg, zn
      1. chain a [61607]
    5. 2nvq
      automatically matched to d1i50a_
      complexed with dut, mg, zn
      1. region a:3-1445 [138634]
    6. 1twc
      complexed with gtp, mn, zn
      1. chain a [112711]
    7. 1twa
      complexed with atp, mn, zn
      1. chain a [112696]
    8. 1i6h
      complexed with mg, zn
      1. chain a [61831]
    9. 1twh
      complexed with atp, mn, zn
      1. chain a [112751]
    10. 1twg
      complexed with ctp, mn, zn
      1. chain a [112738]
    11. 2nvy
      automatically matched to d1i50a_
      complexed with mn, zn
      1. region a:2-1450 [138680]
    12. 2e2i
      automatically matched to d1i50a_
      complexed with dgt, mg, zn
      1. region a:3-1449 [131994]
    13. 2e2j
      automatically matched to d1i50a_
      complexed with g2p, mg, zn
      1. region a:3-1445 [132007]
    14. 2b63
      automatically matched to d1i50a_
      complexed with 5bu, mg, zn
      1. region a:2-1450 [127917]
    15. 2ja7
      automatically matched to d1i50a_
      complexed with bru, mg, tt, zn
      1. region a:2-1450 [138190]
    16. 2ja7
      automatically matched to d1i50a_
      complexed with bru, mg, tt, zn
      1. region m:2-1450 [138206]
    17. 2nvx
      automatically matched to d1i50a_
      complexed with dut, mg, zn
      1. region a:3-1445 [138667]
    18. 2nvt
      automatically matched to d1i50a_
      complexed with g2p, mg, zn
      1. region a:3-1450 [138647]
    19. 2ja5
      automatically matched to d1i50a_
      complexed with bru, mg, zn
      1. region a:2-1450 [138158]
    20. 2ja8
      automatically matched to d1i50a_
      complexed with bru, mg, tt, zn
      1. region a:2-1450 [138222]
    21. 2b8k
      automatically matched to d1i50a_
      complexed with zn
      1. region a:2-1450 [128076]
    22. 2ja6
      automatically matched to d1i50a_
      complexed with bru, mg, tt, zn
      1. region a:2-1450 [138174]
    23. 2yu9
      automatically matched to d1i50a_
      complexed with mg, utp, zn
      1. region a:3-1450 [140064]
    24. 2e2h
      automatically matched to d1i50a_
      complexed with gtp, mg, zn
      1. region a:2-1445 [131981]
    25. 2nvz
      automatically matched to d1i50a_
      complexed with mg, utp, zn
      1. region a:2-1445 [138693]
2. RNA-polymerase beta-prime [64493]
  1. Thermus aquaticus [TaxId: 271] [64494] (4)
    1. 1ynj
      complexed with srn, zn
      1. region d:3-1240 [144704]
    2. 1i6v
      complexed with mg, rfp, zn
      1. chain d [61857]
    3. 1ynn
      automatically matched to 1YNJ D:3-1240
      complexed with rfp, zn
      1. region d:3-1240 [144706]
    4. 2gho
      1. region d:3-1501 [145197]
  2. Thermus thermophilus [TaxId: 274] [75610] (24)
    SQ Q8RQE8; part of multichain biological unit
    1. 1smy
      complexed with g4p, mg, zn
      1. chain d [105779]
      2. chain n [105789]
    2. 2a6h
      automatically matched to d1iw7d_
      complexed with mg, std, zn
      1. region d:2-1505 [126265]
    3. 2a6h
      automatically matched to d1iw7d_
      complexed with mg, std, zn
      1. region n:2-1505 [126275]
    4. 2a69
      automatically matched to d1iw7d_
      complexed with mg, rpt, zn
      1. region d:2-1505 [126216]
    5. 2a69
      automatically matched to d1iw7d_
      complexed with mg, rpt, zn
      1. region n:2-1505 [126226]
    6. 2a68
      automatically matched to d1iw7d_
      complexed with mg, rbt, zn
      1. region d:2-1505 [126196]
    7. 2a68
      automatically matched to d1iw7d_
      complexed with mg, rbt, zn
      1. region n:2-1505 [126206]
    8. 2be5
      automatically matched to d1iw7d_
      complexed with mg, tgt, zn
      1. region d:2-1505 [128356]
    9. 2be5
      automatically matched to d1iw7d_
      complexed with mg, tgt, zn
      1. region n:2-1505 [128366]
    10. 1iw7
      complexed with mg, pb
      1. chain d [71475]
      2. chain n [71483]
    11. 2o5i
      automatically matched to d1iw7d_
      complexed with mg, zn
      1. region d:2-1505 [148601]
    12. 2o5i
      automatically matched to d1iw7d_
      complexed with mg, zn
      1. region n:2-1505 [148604]
    13. 3dxj
      automatically matched to d1iw7d_
      complexed with mg, mpd, ne6, po4, zn
      1. region d:2-1505 [157928]
    14. 3dxj
      automatically matched to d1iw7d_
      complexed with mg, mpd, ne6, po4, zn
      1. region n:2-1505 [157931]
    15. 2a6e
      automatically matched to d1iw7d_
      complexed with mg, zn
      1. region d:2-1505 [126245]
    16. 2a6e
      automatically matched to d1iw7d_
      complexed with mg, zn
      1. region n:2-1505 [126255]
    17. 2o5j
      automatically matched to d1iw7d_
      complexed with apc, mg, zn
      1. region d:2-1505 [148606]
    18. 2o5j
      automatically matched to d1iw7d_
      complexed with apc, mg, zn
      1. region n:2-1505 [148608]
    19. 2ppb
      automatically matched to d1iw7d_
      complexed with apc, mg, std, zn
      1. region d:2-1505 [149754]
    20. 2ppb
      automatically matched to d1iw7d_
      complexed with apc, mg, std, zn
      1. region n:2-1505 [149756]
    21. 1zyr
      automatically matched to d1iw7d_
      complexed with mg, std, zn
      1. region d:2-1505 [125854]
    22. 1zyr
      automatically matched to d1iw7d_
      complexed with mg, std, zn
      1. region n:2-1505 [125864]
    23. 2cw0
      automatically matched to d1iw7d_
      complexed with mg, zn
      1. region d:2-1505 [130903]
    24. 2cw0
      automatically matched to d1iw7d_
      complexed with mg, zn
      1. region n:2-1505 [130913]