Structural Classification of Proteins
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Family: ABC transporter ATPase domain-like

there are two additional subdomains inserted into the central core that has a RecA-like topology

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: P-loop containing nucleoside triphosphate hydrolases [52539]
    3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
  4. Superfamily: P-loop containing nucleoside triphosphate hydrolases [52540]
    division into families based on beta-sheet topologies
    link to SUPERFAMILY database - Superfamily
  5. Family: ABC transporter ATPase domain-like [52686]
    there are two additional subdomains inserted into the central core that has a RecA-like topology

Protein Domains:

  1. ATP-binding subunit of the histidine permease [52687]
    1. Salmonella typhimurium [TaxId: 90371] [52688] (1) picpic
  2. Branched chain aminoacid ABC transporter [75207]
    1. Thermotoga maritima, TM1139 [TaxId: 2336] [75208] (1) picpic
  3. MJ1267 [64025]
    1. Archaeon Methanococcus jannaschii [TaxId: 2190] [64026] (3) picpic
  4. MJ0796 [64027]
    1. Archaeon Methanococcus jannaschii [TaxId: 2190] [64028] (2) picpic
  5. Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain [102378]
    1. Mouse (Mus musculus) [TaxId: 10090] [102379] (8) picpic
      SQ P26361 390-670
    2. Human (Homo sapiens) [TaxId: 9606] [117543] (2) picpic
      SQ P13569 389-671
  6. Peptide transporter Tap1, C-terminal ABC domain [64029]
    1. Human (Homo sapiens) [TaxId: 9606] [64030] (1) picpic
  7. Maltose transport protein MalK, N-terminal domain [52689]
    1. Archaeon Thermococcus litoralis [TaxId: 2265] [52690] (1) picpic
    2. Escherichia coli [TaxId: 562] [102380] (13) picpic
  8. Glucose transport protein GlcV, N-terminal domain [89681]
    1. Archaeon Sulfolobus solfataricus [TaxId: 2287] [89682] (5) picpic
  9. ABC transporter involved in vitamin B12 uptake, BtuD [75209]
    1. Escherichia coli [TaxId: 562] [75210] (1) picpic
  10. Haemolysin B ATP-binding protein [89683]
    1. Escherichia coli [TaxId: 562] [89684] (3) picpic
  11. Multidrug resistance ABC transporter MsbA, C-terminal domain [89685]
    a low-resolution structure of the E. coli MsbA in an open conformation is also available (f.35.1.1)
    1. Vibrio cholerae [TaxId: 666] [89686] (1) picpic
    2. Salmonella typhimurium [TaxId: 90371] [159568] (12) picpic
      SQ P63359 329-581
  12. Multidrug resistance ABC transporter LmrA, C-terminal domain [102381]
    1. Lactococcus lactis [TaxId: 1358] [102382] (1) picpic
  13. Rad50 [52691]
    1. Archaeon Pyrococcus furiosus [TaxId: 2261] [52692] (4) picpic
  14. Smc head domain [52693]
    1. Thermotoga maritima [TaxId: 2336] [52694] (1) picpic
    2. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [117544] (1) picpic
      SQ P32908 2-214,1024-1223
    3. Pyrococcus furiosus [TaxId: 2261] [117545] (2) picpic
      SQ Q877I1 1-167,1012-1173
  15. Cell division protein MukB [52695]
    1. Escherichia coli [TaxId: 562] [52696] (1) picpic
  16. DNA repair protein MutS, the C-terminal domain [52697]
    1. Thermus aquaticus [TaxId: 271] [52698] (4) picpic
    2. Escherichia coli [TaxId: 562] [52699] (10) picpic
      SQ P23909 2-800
  17. Putative ABC transporter PF0895 [110560]
    1. Pyrococcus furiosus [TaxId: 2261] [110561] (1) picpic
      SQ Q8U2E3
  18. Hypothetical protein PH0022, N-terminal domain [117546]
    1. Pyrococcus horikoshii [TaxId: 53953] [117547] (2) picpic
      SQ O57758
  19. Putative ABC transporter TM0544 [117548]
    1. Thermotoga maritima [TaxId: 2336] [117549] (1) picpic
      SQ Q9WZ14
  20. Putative multidrug export ATP-binding/permease protein SAV1866 [142303]
    1. Staphylococcus aureus [TaxId: 1280] [142304] (4) picpic
      SQ Q99T13 324-578
  21. Molybdate/tungstate import ATP-binding protein WtpC (ModC) [159569]
    1. Archaeoglobus fulgidus [TaxId: 2234] [159570] (4) picpic
      SQ O30144 1-240
  22. Methionine import ATP-binding protein MetN [159571]
    1. Escherichia coli [TaxId: 562] [159572] (4) picpic
      SQ P30750 1-240
  23. Sulfate/molybdate ABC transporter, ATP-binding protein [159573]
    1. Methanosarcina acetivorans [TaxId: 2214] [159574] (2) picpic
      SQ Q8TTZ3 1-229
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk