Structural Classification of Proteins
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Protein: 2-oxoisovalerate dehydrogenase (E1B), Pyr module from Pseudomonas putida [TaxId: 303]

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Thiamin diphosphate-binding fold (THDP-binding) [52517]
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465
  4. Superfamily: Thiamin diphosphate-binding fold (THDP-binding) [52518]
    there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules
    two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules
    link to SUPERFAMILY database - Superfamily
  5. Family: Branched-chain alpha-keto acid dehydrogenase Pyr module [88741]
    parent family to TK and PFOR
    heterodimeric protein related to TK; alpha-subunit is the PP module and the N-terminal domain of beta-subunit is the Pyr module
  6. Protein: 2-oxoisovalerate dehydrogenase (E1B), Pyr module [88744]
    chain A is alpha-subunit and chain B is beta-subunit
  7. Species: Pseudomonas putida [TaxId: 303] [88745]

PDB Entry Domains:

  1. 1qs0 picpicxrefxref
    complexed with hri, mg, tdp
    1. region b:2-205 [31830] picpiclink
  2. 2bp7 picpicxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1qs0b1
    1. region b:2-205 [128927] picpiclink
  3. 2bp7 picpicxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1qs0b1
    1. region d:2-205 [128930] picpiclink
  4. 2bp7 picpicxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1qs0b1
    1. region f:2-205 [128933] picpiclink
  5. 2bp7 picpicxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1qs0b1
    1. region h:2-205 [128936] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk