Structural Classification of Proteins
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Protein: RlmB, C-terminal domain from Escherichia coli [TaxId: 562]

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: alpha/beta knot [75216]
    core: 3 layers: a/b/a, parallel beta-sheet of 5 strands, order 21435; contains a deep trefoil knot
  4. Superfamily: alpha/beta knot [75217]
    known or predicted SAM-dependent methytransferases including the SPOUT 'sequence' superfamily
    all known members have dimeric structures
    link to SUPERFAMILY database - Superfamily
  5. Family: SpoU-like RNA 2'-O ribose methyltransferase [75218]
    contains extra strand (3) in the parallel beta-sheet, order 321546
  6. Protein: RlmB, C-terminal domain [82376]
    23S rRNA G2251 2'O-methytransferase
  7. Species: Escherichia coli [TaxId: 562] [82377]

PDB Entry Domains:

  1. 1gz0 picpicxref
    complexed with mse
    1. region a:78-243 [76391] picpiclink
    2. region b:78-243 [76393] picpiclink
    3. region c:78-243 [76395] picpiclink
    4. region d:78-243 [76397] picpiclink
    5. region e:78-243 [76399] picpiclink
    6. region f:78-243 [76400] picpiclink
    7. region g:78-243 [76402] picpiclink
    8. region h:78-243 [76403] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk