Protein: Proteasome beta subunit (catalytic) from Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

The structure of yeast proteasome complexed with the proteasome activator pa26 is available from PDB (1fnt). The 1FNT entry designates protein chains by both upper case and lower case letters creating problems with its processing and presentation in SCOP; the proteasome activator pa26 structure is classified elsewhere in SCOP (a.24.8)

Lineage:

1. Root: scop
2. Class: Alpha and beta proteins (a+b) [53931]
   Mainly antiparallel beta sheets (segregated alpha and beta regions)
3. Fold: Ntn hydrolase-like [56234]
   4 layers: alpha/beta/beta/alpha; has an unusual sheet-to-sheet packing
4. Superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) [56235]
   N-terminal residue provides two catalytic groups, nucleophile and proton donor
   uperfamily
5. Family: Proteasome subunits [56251]
6. Protein: Proteasome beta subunit (catalytic) [56252]
7. Species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [56254]
   The structure of yeast proteasome complexed with the proteasome activator pa26 is available from PDB (1fnt). The 1FNT entry designates protein chains by both upper case and lower case letters creating problems with its processing and presentation in SCOP; the proteasome activator pa26 structure is classified elsewhere in SCOP (a.24.8)

PDB Entry Domains:

1. 1ryp
   different sequences
   complexed with mg; mutant
   1. chain h [41876]
   2. chain i [41877]
   3. chain j [41878]
   4. chain k [41879]
   5. chain l [41880]
   6. chain m [41881]
   7. chain n [41882]
   8. chain v [41883]
   9. chain w [41884]
   10. chain x [41885]
   11. chain y [41886]
   12. chain z [41887]
   13. chain 1 [41888]
   14. chain 2 [41889]
2. 3d29
   automatically matched to d1g0u1_
   complexed with feb
   1. region 1:-8-211 [157219]
3. 3d29
   automatically matched to d1ryph_
   complexed with feb
   1. region 2:2-18j [157220]
4. 3d29
   automatically matched to d1ryph_
   complexed with feb
   1. region n:2-18j [157233]
5. 3d29
   automatically matched to d1g0uh_
   complexed with feb
   1. region h:1-223 [157227]
6. 3d29
   automatically matched to d1g0uh_
   complexed with feb
   1. region v:1-223 [157240]
7. 3d29
   automatically matched to d1g0ui_
   complexed with feb
   1. region i:-8-194 [157228]
8. 3d29
   automatically matched to d1g0ui_
   complexed with feb
   1. region w:-8-194 [157241]
9. 3d29
   automatically matched to d1g0uj_
   complexed with feb
   1. region j:-1-193 [157229]
10. 3d29
    automatically matched to d1g0uj_
    complexed with feb
    1. region x:-1-193 [157242]
11. 3d29
    automatically matched to d1g0uk_
    complexed with feb
    1. region k:1-211 [157230]
12. 3d29
    automatically matched to d1g0uk_
    complexed with feb
    1. region y:1-211 [157243]
13. 3d29
    automatically matched to d1g0ul_
    complexed with feb
    1. region l:-9-194 [157231]
14. 3d29
    automatically matched to d1g0ul_
    complexed with feb
    1. region z:-9-194 [157244]
15. 3d29
    automatically matched to d1g0u1_
    complexed with feb
    1. region m:-8-211 [157232]
16. 1g0u
    different sequences
    complexed with mg
    1. chain h [41890]
    2. chain i [41891]
    3. chain j [41892]
    4. chain k [41893]
    5. chain l [41894]
    6. chain m [41895]
    7. chain n [41896]
    8. chain v [41897]
    9. chain w [41898]
    10. chain x [41899]
    11. chain y [41900]
    12. chain z [41901]
    13. chain 1 [41902]
    14. chain 2 [41903]
17. 2gpl
    automatically matched to d1g0u1_
    complexed with biq
    1. region 1:-8-211 [135456]
18. 2gpl
    automatically matched to d1ryph_
    complexed with biq
    1. region 2:2-18j [135457]
19. 2gpl
    automatically matched to d1g0uh_
    complexed with biq
    1. region h:1-223 [135465]
20. 2gpl
    automatically matched to d1g0ui_
    complexed with biq
    1. region i:-8-194 [135466]
21. 2gpl
    automatically matched to d1g0ul_
    complexed with biq
    1. region l:-9-194 [135469]
22. 2gpl
    automatically matched to d1g0uj_
    complexed with biq
    1. region j:1-193 [135467]
23. 2gpl
    automatically matched to d1g0uj_
    complexed with biq
    1. region x:1-193 [135481]
24. 2gpl
    automatically matched to d1g0uk_
    complexed with biq
    1. region k:1-211 [135468]
25. 2gpl
    automatically matched to d1g0uk_
    complexed with biq
    1. region y:1-211 [135482]
26. 2gpl
    automatically matched to d1g0u1_
    complexed with biq
    1. region m:-8-211 [135470]
27. 2gpl
    automatically matched to d1ryph_
    complexed with biq
    1. region n:2-18j [135471]
28. 2gpl
    automatically matched to d1g0uh_
    complexed with biq
    1. region v:1-223 [135479]
29. 2gpl
    automatically matched to d1g0ui_
    complexed with biq
    1. region w:-8-194 [135480]
30. 2gpl
    automatically matched to d1g0ul_
    complexed with biq
    1. region z:-9-194 [135483]
31. 1g65
    different sequences
    complexed with epx, mg
    1. chain h [41904]
    2. chain i [41905]
    3. chain j [41906]
    4. chain k [41907]
    5. chain l [41908]
    6. chain m [41909]
    7. chain n [41910]
    8. chain v [41911]
    9. chain w [41912]
    10. chain x [41913]
    11. chain y [41914]
    12. chain z [41915]
    13. chain 1 [41916]
    14. chain 2 [41917]
32. 2fak
    automatically matched to d1g0uj_
    complexed with sa1
    1. region j:1-193 [133206]
33. 2fak
    automatically matched to d1g0uj_
    complexed with sa1
    1. region x:1-193 [133220]
34. 2fak
    automatically matched to d1g0uk_
    complexed with sa1
    1. region k:1-211 [133207]
35. 2fak
    automatically matched to d1g0uk_
    complexed with sa1
    1. region y:1-211 [133221]
36. 2fak
    automatically matched to d1g0u1_
    complexed with sa1
    1. region 1:-8-211 [133195]
37. 2fak
    automatically matched to d1g0u1_
    complexed with sa1
    1. region m:-8-211 [133209]
38. 2fak
    automatically matched to d1ryph_
    complexed with sa1
    1. region 2:2-18j [133196]
39. 2fak
    automatically matched to d1ryph_
    complexed with sa1
    1. region n:2-18j [133210]
40. 2fak
    automatically matched to d1g0uh_
    complexed with sa1
    1. region h:1-223 [133204]
41. 2fak
    automatically matched to d1g0uh_
    complexed with sa1
    1. region v:1-223 [133218]
42. 2fak
    automatically matched to d1g0ui_
    complexed with sa1
    1. region i:-8-194 [133205]
43. 2fak
    automatically matched to d1g0ui_
    complexed with sa1
    1. region w:-8-194 [133219]
44. 2fak
    automatically matched to d1g0ul_
    complexed with sa1
    1. region l:-9-194 [133208]
45. 2fak
    automatically matched to d1g0ul_
    complexed with sa1
    1. region z:-9-194 [133222]
46. 2f16
    automatically matched to d1g0uk_
    complexed with bo2
    1. region k:1-211 [132701]
47. 2f16
    automatically matched to d1g0uj_
    complexed with bo2
    1. region j:1-193 [132700]
48. 2f16
    automatically matched to d1g0uj_
    complexed with bo2
    1. region x:1-193 [132714]
49. 2f16
    automatically matched to d1g0uk_
    complexed with bo2
    1. region y:1-211 [132715]
50. 2f16
    automatically matched to d1g0u1_
    complexed with bo2
    1. region 1:-8-211 [132689]
51. 2f16
    automatically matched to d1g0u1_
    complexed with bo2
    1. region m:-8-211 [132703]
52. 2f16
    automatically matched to d1ryph_
    complexed with bo2
    1. region 2:2-18j [132690]
53. 2f16
    automatically matched to d1ryph_
    complexed with bo2
    1. region n:2-18j [132704]
54. 2f16
    automatically matched to d1g0uh_
    complexed with bo2
    1. region h:1-223 [132698]
55. 2f16
    automatically matched to d1g0uh_
    complexed with bo2
    1. region v:1-223 [132712]
56. 2f16
    automatically matched to d1g0ui_
    complexed with bo2
    1. region i:-8-194 [132699]
57. 2f16
    automatically matched to d1g0ui_
    complexed with bo2
    1. region w:-8-194 [132713]
58. 2f16
    automatically matched to d1g0ul_
    complexed with bo2
    1. region l:-9-194 [132702]
59. 2f16
    automatically matched to d1g0ul_
    complexed with bo2
    1. region z:-9-194 [132716]
60. 2zcy
    automatically matched to d1g0u1_
    complexed with srg
    1. region 0:-8-211 [154353]
61. 2zcy
    automatically matched to d1ryph_
    complexed with srg
    1. region 1:2-18j [154354]
62. 2zcy
    automatically matched to d1g0uh_
    complexed with srg
    1. region h:1-223 [154361]
63. 2zcy
    automatically matched to d1g0ui_
    complexed with srg
    1. region i:-8-194 [154362]
64. 2zcy
    automatically matched to d1g0uj_
    complexed with srg
    1. region j:-1-193 [154363]
65. 2zcy
    automatically matched to d1g0uk_
    complexed with srg
    1. region k:1-211 [154364]
66. 2zcy
    automatically matched to d1g0ul_
    complexed with srg
    1. region l:-9-194 [154365]
67. 2zcy
    automatically matched to d1g0u1_
    complexed with srg
    1. region m:-8-211 [154366]
68. 2zcy
    automatically matched to d1ryph_
    complexed with srg
    1. region n:2-18j [154367]
69. 2zcy
    automatically matched to d1g0uh_
    complexed with srg
    1. region v:1-223 [154374]
70. 2zcy
    automatically matched to d1g0ui_
    complexed with srg
    1. region w:-8-194 [154375]
71. 2zcy
    automatically matched to d1g0uj_
    complexed with srg
    1. region x:-1-193 [154376]
72. 2zcy
    automatically matched to d1g0uk_
    complexed with srg
    1. region y:1-211 [154377]
73. 2zcy
    automatically matched to d1g0ul_
    complexed with srg
    1. region z:-9-194 [154378]
74. 3bdm
    automatically matched to d1g0u1_
    complexed with gdt
    1. region 0:-8-211 [155128]
75. 3bdm
    automatically matched to d1g0u1_
    complexed with gdt
    1. region m:-8-211 [155141]
76. 3bdm
    automatically matched to d1ryph_
    complexed with gdt
    1. region 1:2-18j [155129]
77. 3bdm
    automatically matched to d1ryph_
    complexed with gdt
    1. region n:2-18j [155142]
78. 3bdm
    automatically matched to d1g0uh_
    complexed with gdt
    1. region h:1-223 [155136]
79. 3bdm
    automatically matched to d1g0uh_
    complexed with gdt
    1. region v:1-223 [155149]
80. 3bdm
    automatically matched to d1g0ui_
    complexed with gdt
    1. region i:-8-194 [155137]
81. 3bdm
    automatically matched to d1g0ui_
    complexed with gdt
    1. region w:-8-194 [155150]
82. 3bdm
    automatically matched to d1g0uj_
    complexed with gdt
    1. region j:-1-193 [155138]
83. 3bdm
    automatically matched to d1g0uj_
    complexed with gdt
    1. region x:-1-193 [155151]
84. 3bdm
    automatically matched to d1g0uk_
    complexed with gdt
    1. region k:1-211 [155139]
85. 3bdm
    automatically matched to d1g0uk_
    complexed with gdt
    1. region y:1-211 [155152]
86. 3bdm
    automatically matched to d1g0ul_
    complexed with gdt
    1. region l:-9-194 [155140]
87. 3bdm
    automatically matched to d1g0ul_
    complexed with gdt
    1. region z:-9-194 [155153]
88. 3e47
    automatically matched to d1ryph_
    complexed with esy
    1. region 2:2-18j [157997]
89. 3e47
    automatically matched to d1ryph_
    complexed with esy
    1. region n:2-18j [158010]
90. 3e47
    automatically matched to d1g0uh_
    complexed with esy
    1. region h:1-223 [158004]
91. 3e47
    automatically matched to d1g0uh_
    complexed with esy
    1. region v:1-223 [158017]
92. 3e47
    automatically matched to d1g0ui_
    complexed with esy
    1. region i:-8-194 [158005]
93. 3e47
    automatically matched to d1g0ui_
    complexed with esy
    1. region w:-8-194 [158018]
94. 3e47
    automatically matched to d1g0uj_
    complexed with esy
    1. region j:-1-193 [158006]
95. 3e47
    automatically matched to d1g0uj_
    complexed with esy
    1. region x:-1-193 [158019]
96. 3e47
    automatically matched to d1g0uk_
    complexed with esy
    1. region k:1-211 [158007]
97. 3e47
    automatically matched to d1g0uk_
    complexed with esy
    1. region y:1-211 [158020]
98. 3e47
    automatically matched to d1g0ul_
    complexed with esy
    1. region l:-9-194 [158008]
99. 3e47
    automatically matched to d1g0ul_
    complexed with esy
    1. region z:-9-194 [158021]
100. 3e47
     automatically matched to d1g0u1_
     complexed with esy
     1. region 1:-8-211 [157996]
101. 3e47
     automatically matched to d1g0u1_
     complexed with esy
     1. region m:-8-211 [158009]
102. 1jd2
     complexed with 95a, mg
     1. chain h [66523]
     2. chain i [66524]
     3. chain j [66525]
     4. chain k [66526]
     5. chain l [66527]
     6. chain m [66528]
     7. chain n [66529]
     8. chain v [66537]
     9. chain w [66538]
     10. chain x [66539]
     11. chain y [66540]
     12. chain z [66541]
     13. chain 1 [66514]
     14. chain 2 [66515]
103. 1z7q
     automatically matched to d1g0uj_
     1. region k:2-198 [124658]
104. 1z7q
     automatically matched to d1g0uj_
     1. region y:2-198 [124671]
105. 1z7q
     automatically matched to d1g0u1_
     1. region n:1-233 [124660]
106. 1z7q
     automatically matched to d1ryph_
     1. region h:2-196 [124655]
107. 1z7q
     automatically matched to d1ryph_
     1. region v:2-196 [124668]
108. 1z7q
     automatically matched to d1g0uh_
     1. region i:1-222 [124656]
109. 1z7q
     automatically matched to d1g0uh_
     1. region w:1-222 [124669]
110. 1z7q
     automatically matched to d1g0ui_
     1. region j:1-204 [124657]
111. 1z7q
     automatically matched to d1g0ui_
     1. region x:1-204 [124670]
112. 1z7q
     automatically matched to d1g0ul_
     1. region m:1-222 [124659]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk