Structural Classification of Proteins
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Protein: Presequence protease 1, PREP1 from Thale cress (Arabidopsis thaliana) [TaxId: 3702]

SQ Q9LJL3 100-356! SQ Q9LJL3 357-624! SQ Q9LJL3 625-882! SQ Q9LJL3 883-1078

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: LuxS/MPP-like metallohydrolase [63410]
    core: beta-alpha-beta(2)-alpha(2); 2 layers: alpha/beta
  4. Superfamily: LuxS/MPP-like metallohydrolase [63411]
    Share the same "active site motif" HxxEH located in the first core helix, but differ in one of the zinc-binding residues
    link to SUPERFAMILY database - Superfamily
  5. Family: MPP-like [63412]
    Common fold elaborated with many additional structures; duplication: each family member consists of two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)-beta structure, but only the N-terminal domain of MPP beta chain binds the catalytic metal
  6. Protein: Presequence protease 1, PREP1 [143498]
    duplication: comprises four domains of this fold; similar to the MPP alpha-beta heterodimer
  7. Species: Thale cress (Arabidopsis thaliana) [TaxId: 3702] [143499]
    SQ Q9LJL3 100-356! SQ Q9LJL3 357-624! SQ Q9LJL3 625-882! SQ Q9LJL3 883-1078

PDB Entry Domains:

  1. 2fge picpic
    complexed with cl, mg, zn; mutant
    1. region a:540-797 [133430] picpiclink
  2. 2fge picpic
    complexed with cl, mg, zn; mutant
    1. region a:798-993 [133431] picpiclink
  3. 2fge picpic
    complexed with cl, mg, zn; mutant
    1. region a:272-539 [133432] picpiclink
  4. 2fge picpic
    complexed with cl, mg, zn; mutant
    1. region a:15-271 [133433] picpiclink
  5. 2fge picpic
    automatically matched to 2FGE A:540-797
    complexed with cl, mg, zn; mutant
    1. region b:540-797 [133434] picpiclink
  6. 2fge picpic
    automatically matched to 2FGE A:798-993
    complexed with cl, mg, zn; mutant
    1. region b:798-993 [133435] picpiclink
  7. 2fge picpic
    automatically matched to 2FGE A:272-539
    complexed with cl, mg, zn; mutant
    1. region b:272-539 [133436] picpiclink
  8. 2fge picpic
    automatically matched to 2FGE A:15-271
    complexed with cl, mg, zn; mutant
    1. region b:15-271 [133437] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk