Structural Classification of Proteins
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Protein: Cytochrome bc1 core subunit 1 from Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: LuxS/MPP-like metallohydrolase [63410]
    core: beta-alpha-beta(2)-alpha(2); 2 layers: alpha/beta
  4. Superfamily: LuxS/MPP-like metallohydrolase [63411]
    Share the same "active site motif" HxxEH located in the first core helix, but differ in one of the zinc-binding residues
    link to SUPERFAMILY database - Superfamily
  5. Family: MPP-like [63412]
    Common fold elaborated with many additional structures; duplication: each family member consists of two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)-beta structure, but only the N-terminal domain of MPP beta chain binds the catalytic metal
  6. Protein: Cytochrome bc1 core subunit 1 [63408]
  7. Species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [64304]

PDB Entry Domains:

  1. 3cx5 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1kb9a1
    complexed with 6ph, 7ph, 8pe, 9pe, cn3, cn5, fes, hem, m3l, sma, suc, umq
    1. region a:27-239 [157076] picpiclink
  2. 3cx5 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1kb9a2
    complexed with 6ph, 7ph, 8pe, 9pe, cn3, cn5, fes, hem, m3l, sma, suc, umq
    1. region a:240-457 [157077] picpiclink
  3. 3cx5 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1kb9a1
    complexed with 6ph, 7ph, 8pe, 9pe, cn3, cn5, fes, hem, m3l, sma, suc, umq
    1. region l:27-239 [157092] picpiclink
  4. 3cx5 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1kb9a2
    complexed with 6ph, 7ph, 8pe, 9pe, cn3, cn5, fes, hem, m3l, sma, suc, umq
    1. region l:240-457 [157093] picpiclink
  5. 1kb9 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    complexed with cdl, fes, hem, pcf, pef, pie, sma, umq, uq6
    1. region a:27-239 [77311] picpiclink
    2. region a:240-457 [77312] picpiclink
  6. 2ibz picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1kb9a1
    complexed with fes, hem, sma, uq6
    1. region a:27-239 [137215] picpiclink
  7. 2ibz picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1kb9a2
    complexed with fes, hem, sma, uq6
    1. region a:240-457 [137216] picpiclink
  8. 1ezv picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    complexed with fes, hem, sma, uq6
    1. region a:27-239 [59541] picpiclink
    2. region a:240-456 [59542] picpiclink
  9. 3cxh picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1kb9a1
    complexed with 6ph, 7ph, 8pe, 9pe, cn6, fes, hem, m3l, sma, suc, umq
    1. region a:27-239 [157109] picpiclink
  10. 3cxh picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1kb9a2
    complexed with 6ph, 7ph, 8pe, 9pe, cn6, fes, hem, m3l, sma, suc, umq
    1. region a:240-457 [157110] picpiclink
  11. 3cxh picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1kb9a1
    complexed with 6ph, 7ph, 8pe, 9pe, cn6, fes, hem, m3l, sma, suc, umq
    1. region l:27-239 [157125] picpiclink
  12. 3cxh picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1kb9a2
    complexed with 6ph, 7ph, 8pe, 9pe, cn6, fes, hem, m3l, sma, suc, umq
    1. region l:240-457 [157126] picpiclink
  13. 1p84 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    complexed with 3pe, 3ph, cdl, dbt, fes, hem, pc1, umq, uq6
    1. region a:27-239 [87850] picpiclink
    2. region a:240-457 [87851] picpiclink
  14. 1kyo picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    complexed with fes, hem, m3l, sma
    1. region a:27-239 [73249] picpiclink
    2. region a:240-456 [73250] picpiclink
    3. region l:27-239 [73264] picpiclink
    4. region l:240-456 [73265] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk