Structural Classification of Proteins
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Family: Viral DNA-binding domain

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Ferredoxin-like [54861]
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. Superfamily: Viral DNA-binding domain [54957]
    link to SUPERFAMILY database - Superfamily
  5. Family: Viral DNA-binding domain [54958]

Protein Domains:

  1. Papillomavirus-1 E2 protein [54959]
    forms dimers with subunit beta-sheets making (8,12) barrel
    1. Bovine papillomavirus type 1 [TaxId: 10559] [54960] (3)
      1. 2bop picpic
        protein/DNA complex; complexed with yb
        1. chain a [39217] picpiclink
      2. 1jjh picpic
        1. chain a [63119] picpiclink
        2. chain b [63120] picpiclink
        3. chain c [63121] picpiclink
      3. 1dbd picpic
        1. chain a [39218] picpiclink
        2. chain b [39219] picpiclink
    2. Human papillomavirus type 31 [TaxId: 10585] [54961] (2)
      1. 1a7g picpic
        complexed with so4
        1. chain e [39220] picpiclink
      2. 1dhm picpic
        1. chain a [39221] picpiclink
        2. chain b [39222] picpiclink
    3. Human papillomavirus type 16 [TaxId: 333760] [54962] (5)
      SQ P03120 286-365
      1. 2q79 picpic
        automatically matched to d1r8pa_
        complexed with so4
        1. region a:284-362 [150084] picpiclink
      2. 1by9 picpic
        1. chain a [39223] picpiclink
      3. 1zzf picpic
        automatically matched to d1by9__
        1. region a:2-80 [125902] picpiclink
      4. 1zzf picpic
        automatically matched to d1by9__
        1. region b:2-80 [125903] picpiclink
      5. 1r8p picpic
        1. chain a [111720] picpiclink
        2. chain b [111721] picpiclink
    4. Human papillomavirus type 18 [TaxId: 333761] [54963] (2)
      1. 1f9f picpic
        complexed with so4
        1. chain a [39224] picpiclink
        2. chain b [39225] picpiclink
        3. chain c [39226] picpiclink
        4. chain d [39227] picpiclink
      2. 1jj4 picpic
        1. chain a [63112] picpiclink
        2. chain b [63113] picpiclink
    5. Human papillomavirus type 6a [TaxId: 37122] [102990] (11)
      1. 1r8h picpic
        complexed with po4
        1. chain a [97233] picpiclink
        2. chain b [97234] picpiclink
        3. chain c [97235] picpiclink
        4. chain d [97236] picpiclink
        5. chain e [97237] picpiclink
        6. chain f [97238] picpiclink
      2. 2aye picpic
        automatically matched to d1r8ha_
        complexed with gol, so4
        1. region a:282-366 [127546] picpiclink
      3. 2aye picpic
        automatically matched to d1r8ha_
        complexed with gol, so4
        1. region b:281-366 [127547] picpiclink
      4. 2aye picpic
        automatically matched to d1r8ha_
        complexed with gol, so4
        1. region c:281-366 [127548] picpiclink
      5. 2aye picpic
        automatically matched to d1r8ha_
        complexed with gol, so4
        1. region d:281-366 [127549] picpiclink
      6. 2aye picpic
        automatically matched to d1r8ha_
        complexed with gol, so4
        1. region e:281-366 [127550] picpiclink
      7. 2aye picpic
        automatically matched to d1r8ha_
        complexed with gol, so4
        1. region f:282-366 [127551] picpiclink
      8. 2ayg picpic
        automatically matched to d1r8ha_
        1. region a:281-366 [127552] picpiclink
      9. 2ayg picpic
        automatically matched to d1r8ha_
        1. region b:281-366 [127553] picpiclink
      10. 2ayb picpic
        automatically matched to d1r8ha_
        1. region a:281-366 [127544] picpiclink
      11. 2ayb picpic
        automatically matched to d1r8ha_
        1. region b:281-366 [127545] picpiclink
  2. Epstein barr virus nuclear antigen-1 (ebna1) [54964]
    DNA-binding mode differs from that of E2 protein
    1. Epstein-Barr virus [TaxId: 10376] [54965] (2)
      1. 1b3t picpic
        protein/DNA complex
        1. chain a [39228] picpiclink
        2. chain b [39229] picpiclink
      2. 1vhi picpic
        1. chain a [39230] picpiclink
        2. chain b [39231] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk