Structural Classification of Proteins
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Family: Ferredoxin domains from multidomain proteins

members of this "family" may be more closely related to other ferredoxins than to each other

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Ferredoxin-like [54861]
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. Superfamily: 4Fe-4S ferredoxins [54862]
    link to SUPERFAMILY database - Superfamily
  5. Family: Ferredoxin domains from multidomain proteins [54884]
    members of this "family" may be more closely related to other ferredoxins than to each other

Protein Domains:

  1. Fe-only hydrogenase, second domain [54885]
    1. Clostridium pasteurianum [TaxId: 1501] [54886] (4)
      1. 3c8y picpicxrefxref
        automatically matched to d1c4aa3
        complexed with fes, gol, hcn, sf4
        1. region a:127-209 [156059] picpiclink
      2. 1feh picpicxrefxref
        complexed with fs2, fsa, fsb, fsh, hc1, hc2
        1. region a:127-209 [38998] picpiclink
      3. 1c4c picpicxrefxref
        1. region a:127-209 [38999] picpiclink
      4. 1c4a picpicxrefxref
        1. region a:127-209 [39000] picpiclink
  2. Fe-only hydrogenase larger subunit, N-domain [54887]
    1. Desulfovibrio desulfuricans [TaxId: 876] [54888] (1)
      1. 1hfe picpicxrefxref
        complexed with cmo, cyn, fcy, fe2, fs4, pdt, zn
        1. region l:2-86 [39001] picpiclink
        2. region m:2-86 [39002] picpiclink
  3. Pyruvate-ferredoxin oxidoreductase, PFOR, domain V [54889]
    1. Desulfovibrio africanus [TaxId: 873] [54890] (17)
      1. 2c42 picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1b0pa5
        complexed with ca, mg, pyr, sf4, tpp
        1. region a:669-785 [129794] picpiclink
      2. 2c42 picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1b0pa5
        complexed with ca, mg, pyr, sf4, tpp
        1. region b:669-785 [129799] picpiclink
      3. 2c3m picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1b0pa5
        complexed with ca, cl, mg, sf4, tpp
        1. region a:669-785 [129744] picpiclink
      4. 2c3m picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1b0pa5
        complexed with ca, cl, mg, sf4, tpp
        1. region b:669-785 [129749] picpiclink
      5. 2c3y picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1b0pa5
        complexed with ca, co2, htl, mg, sf4
        1. region a:669-785 [129784] picpiclink
      6. 2c3y picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1b0pa5
        complexed with ca, co2, htl, mg, sf4
        1. region b:669-785 [129789] picpiclink
      7. 1kek picpicxrefxrefxrefxref
        complexed with ca, co2, fs4, htl, mg
        1. region a:669-785 [68528] picpiclink
        2. region b:669-785 [68533] picpiclink
      8. 2c3p picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1b0pa5
        complexed with 1tp, ca, mg, sf4
        1. region a:669-785 [129764] picpiclink
      9. 2c3p picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1b0pa5
        complexed with 1tp, ca, mg, sf4
        1. region b:669-785 [129769] picpiclink
      10. 2uza picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1b0pa5
        complexed with ca, co2, htl, mg, sf4
        1. region a:669-785 [152329] picpiclink
      11. 2uza picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1b0pa5
        complexed with ca, co2, htl, mg, sf4
        1. region b:669-785 [152334] picpiclink
      12. 2c3u picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1b0pa5
        complexed with 2tp, ca, mg, pyr, sf4
        1. region a:669-785 [129774] picpiclink
      13. 2c3u picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1b0pa5
        complexed with 2tp, ca, mg, pyr, sf4
        1. region b:669-785 [129779] picpiclink
      14. 1b0p picpicxrefxrefxrefxref
        complexed with ca, fs4, mg, tpp
        1. region a:669-785 [39003] picpiclink
        2. region b:669-785 [39004] picpiclink
      15. 2c3o picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1b0pa5
        complexed with ca, mg, pyr, sf4, tpp
        1. region a:669-785 [129754] picpiclink
      16. 2c3o picpicxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1b0pa5
        complexed with ca, mg, pyr, sf4, tpp
        1. region b:669-785 [129759] picpiclink
      17. 2pda picpicxrefxrefxrefxref
        complexed with ca, fs4, mg, pyr, tpp
        1. region a:669-785 [39005] picpiclink
        2. region b:669-785 [39006] picpiclink
  4. Dihydropyrimidine dehydrogenase, C-terminal domain [54891]
    includes linker from domain 4
    1. Pig (Sus scrofa) [TaxId: 9823] [54892] (5)
      1. 1gte picpicxrefxrefxrefxref
        complexed with fad, fmn, fs4, iur
        1. region a:845-1017 [70444] picpiclink
        2. region b:845-1018 [70449] picpiclink
        3. region c:845-1017 [70454] picpiclink
        4. region d:845-1019 [70459] picpiclink
      2. 1h7w picpicxrefxrefxrefxref
        complexed with fad, fmn, fs4
        1. region a:845-1017 [39007] picpiclink
        2. region b:845-1018 [39008] picpiclink
        3. region c:845-1017 [39009] picpiclink
        4. region d:845-1019 [39010] picpiclink
      3. 1h7x picpicxrefxrefxrefxref
        complexed with fad, fmn, fs4, ndp, urf; mutant
        1. region a:845-1017 [39011] picpiclink
        2. region b:845-1020 [39012] picpiclink
        3. region c:845-1020 [39013] picpiclink
        4. region d:845-1020 [39014] picpiclink
      4. 1gth picpicxrefxrefxrefxref
        complexed with fad, fmn, fs4, idh, iur, ndp, ura
        1. region a:845-1020 [70487] picpiclink
        2. region b:845-1020 [70492] picpiclink
        3. region c:845-1020 [70497] picpiclink
        4. region d:845-1020 [70502] picpiclink
      5. 1gt8 picpicxrefxrefxrefxref
        complexed with fad, fmn, fs4, ndp, uaa
        1. region a:845-1020 [70422] picpiclink
        2. region b:845-1020 [70427] picpiclink
        3. region c:845-1020 [70432] picpiclink
        4. region d:845-1020 [70437] picpiclink
  5. Adenylylsulfate reductase B subunit [69726]
    includes N-terminal partly folded tail
    1. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [69727] (10)
      1. 1jnr picpicxrefxrefxref
        complexed with fad, fs4, gol
        1. chain b [66969] picpiclink
        2. chain d [66973] picpiclink
      2. 2fjb picpic
        automatically matched to d1jnrb_
        complexed with amp, na, sf4, sfd
        1. region b:702-850 [133557] picpiclink
      3. 2fjb picpic
        automatically matched to d1jnrb_
        complexed with amp, na, sf4, sfd
        1. region d:2702-2850 [133558] picpiclink
      4. 2fje picpic
        automatically matched to d1jnrb_
        complexed with fad, sf4
        1. region b:702-850 [133577] picpiclink
      5. 2fje picpic
        automatically matched to d1jnrb_
        complexed with fad, sf4
        1. region d:2702-2850 [133578] picpiclink
      6. 2fjd picpic
        automatically matched to d1jnrb_
        complexed with sf4, sfd
        1. region b:702-850 [133575] picpiclink
      7. 2fjd picpic
        automatically matched to d1jnrb_
        complexed with sf4, sfd
        1. region d:2702-2850 [133576] picpiclink
      8. 2fja picpic
        automatically matched to d1jnrb_
        complexed with adx, fad, sf4
        1. region b:702-850 [133555] picpiclink
      9. 2fja picpic
        automatically matched to d1jnrb_
        complexed with adx, fad, sf4
        1. region d:2702-2850 [133556] picpiclink
      10. 1jnz picpicxrefxrefxref
        complexed with fad, fs4, so3
        1. chain b [71769] picpiclink
        2. chain d [71773] picpiclink
  6. Formate dehydrogenase N, iron-sulfur (beta) subunit [75427]
    1. Escherichia coli [TaxId: 562] [75428] (2)
      1. 1kqf picpicxrefxrefxrefxref
        complexed with 6mo, cdl, cse, fs4, hem, mgd
        1. region b:2-245 [75900] picpiclink
      2. 1kqg picpicxrefxrefxrefxref
        complexed with 6mo, cdl, cse, fs4, hem, hq, mgd
        1. region b:2-245 [75902] picpiclink
  7. Tungsten containing formate dehydrogenase, small subunit [82664]
    1. Desulfovibrio gigas [TaxId: 879] [82665] (1)
      1. 1h0h picpicxrefxref
        complexed with 2md, ca, cse, epe, fs4, mgd, s, w
        1. chain b [76437] picpiclink
        2. chain l [76440] picpiclink
  8. Respiratory nitrate reductase 1 beta chain [102955]
    1. Escherichia coli [TaxId: 562] [102956] (7)
      SQ P11349
      1. 1y5i picpicxrefxrefxref
        automatically matched to d1q16b_
        complexed with 3ph, 6mo, aga, f3s, hem, md1, sf4; mutant
        1. region b:1-509 [122641] picpiclink
      2. 1q16 picpicxrefxrefxref
        complexed with 3ph, 6mo, aga, f3s, hem, md1, sf4
        1. chain b [95548] picpiclink
      3. 1r27 picpicxrefxref
        complexed with f3s, fs4, mgd, mo
        1. chain b [96850] picpiclink
        2. chain d [96853] picpiclink
      4. 1y4z picpicxrefxrefxref
        complexed with 6mo, aga, f3s, hem, md1, pci, sf4; mutant
        1. region b:1-509 [144594] picpiclink
      5. 1siw picpicxrefxrefxref
        complexed with 3ph, f3s, gdp, hem, sf4
        1. chain b [105591] picpiclink
      6. 1y5l picpicxrefxrefxref
        automatically matched to d1q16b_
        complexed with 3ph, 6mo, f3s, hem, md1, sf4; mutant
        1. region b:1-509 [122644] picpiclink
      7. 1y5n picpicxrefxrefxref
        automatically matched to d1q16b_
        complexed with 3ph, 6mo, aga, f3s, hem, md1, pci, sf4; mutant
        1. region b:1-509 [122649] picpiclink
  9. Transhydroxylase beta subunit, BthL, N-terminal domain [110948]
    1. Pelobacter acidigallici [TaxId: 35816] [110949] (6)
      SQ P80564
      1. 1vlf picpicxrefxrefxref
        complexed with 4mo, btt, ca, fs4, mgd
        1. region n:1-195 [108795] picpiclink
        2. region p:1-195 [108799] picpiclink
        3. region r:1-195 [108803] picpiclink
        4. region t:1-195 [108807] picpiclink
        5. region v:1-195 [108811] picpiclink
        6. region x:1-195 [108815] picpiclink
      2. 1ti6 picpicxrefxrefxref
        complexed with 4mo, btt, ca, fs4, mgd
        1. region b:1-195 [106977] picpiclink
        2. region d:1-195 [106981] picpiclink
        3. region f:1-195 [106985] picpiclink
        4. region h:1-195 [106989] picpiclink
        5. region j:1-195 [106993] picpiclink
        6. region l:1-195 [106997] picpiclink
      3. 1vle picpicxrefxrefxref
        complexed with 4mo, ca, fs4, mgd, pyg
        1. region n:1-195 [108771] picpiclink
        2. region p:1-195 [108775] picpiclink
        3. region r:1-195 [108779] picpiclink
        4. region t:1-195 [108783] picpiclink
        5. region v:1-195 [108787] picpiclink
        6. region x:1-195 [108791] picpiclink
      4. 1ti4 picpicxrefxrefxref
        complexed with 4mo, ca, fs4, mgd, pyg
        1. region b:1-195 [106953] picpiclink
        2. region d:1-195 [106957] picpiclink
        3. region f:1-195 [106961] picpiclink
        4. region h:1-195 [106965] picpiclink
        5. region j:1-195 [106969] picpiclink
        6. region l:1-195 [106973] picpiclink
      5. 1vld picpicxrefxrefxref
        complexed with 4mo, act, ca, fs4, mgd
        1. region n:1-195 [108747] picpiclink
        2. region p:1-195 [108751] picpiclink
        3. region r:1-195 [108755] picpiclink
        4. region t:1-195 [108759] picpiclink
        5. region v:1-195 [108763] picpiclink
        6. region x:1-195 [108767] picpiclink
      6. 1ti2 picpicxrefxrefxref
        complexed with 4mo, act, ca, fs4, mgd
        1. region b:1-195 [106929] picpiclink
        2. region d:1-195 [106933] picpiclink
        3. region f:1-195 [106937] picpiclink
        4. region h:1-195 [106941] picpiclink
        5. region j:1-195 [106945] picpiclink
        6. region l:1-195 [106949] picpiclink
  10. NADH-quinone oxidoreductase chain 9, Nqo9 [143252]
    1. Thermus thermophilus [TaxId: 274] [143253] (4)
      SQ Q56224 26-179
      1. 2fug picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with fes, fmn, sf4
        1. region 9:26-179 [134133] picpiclink
      2. 2fug picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2FUG 9:26-179
        complexed with fes, fmn, sf4
        1. region g:26-179 [134145] picpiclink
      3. 2fug picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2FUG 9:26-179
        complexed with fes, fmn, sf4
        1. region p:26-179 [134158] picpiclink
      4. 2fug picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2FUG 9:26-179
        complexed with fes, fmn, sf4
        1. region y:26-179 [134171] picpiclink
  11. NADH-quinone oxidoreductase chain 3, Nqo3, domain 2 [143254]
    1. Thermus thermophilus [TaxId: 274] [143255] (4)
      SQ Q56223 96-246
      1. 2fug picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with fes, fmn, sf4
        1. region 3:96-246 [134128] picpiclink
      2. 2fug picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2FUG 3:96-246
        complexed with fes, fmn, sf4
        1. region c:96-246 [134141] picpiclink
      3. 2fug picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2FUG 3:96-246
        complexed with fes, fmn, sf4
        1. region l:96-246 [134154] picpiclink
      4. 2fug picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2FUG 3:96-246
        complexed with fes, fmn, sf4
        1. region u:96-246 [134167] picpiclink
  12. DsrB insert domain [160277]
    1. Desulfovibrio vulgaris [TaxId: 881] [160278] (2)
      SQ P45575 209-277
      1. 2v4j picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with sf4, so3, srm
        1. region b:209-277 [152559] picpiclink
      2. 2v4j picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2V4J B:209-277
        complexed with sf4, so3, srm
        1. region e:209-277 [152566] picpiclink
    2. Archaeoglobus fulgidus [TaxId: 2234] [160279] (2)
      SQ Q59110 197-261
      1. 3c7b picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with sf4, so3, srm
        1. region b:197-261 [156004] picpiclink
      2. 3c7b picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 3C7B B:197-261
        complexed with sf4, so3, srm
        1. region e:197-261 [156010] picpiclink
  13. DsrA insert domain [160280]
    1. Desulfovibrio vulgaris [TaxId: 881] [160281] (2)
      SQ P45574 242-322
      1. 2v4j picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with sf4, so3, srm
        1. region a:242-322 [152556] picpiclink
      2. 2v4j picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2V4J A:242-322
        complexed with sf4, so3, srm
        1. region d:242-322 [152563] picpiclink
    2. Archaeoglobus fulgidus [TaxId: 2234] [160282] (2)
      SQ Q59109 240-305
      1. 3c7b picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with sf4, so3, srm
        1. region a:239-304 [156001] picpiclink
      2. 3c7b picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 3C7B A:239-304
        complexed with sf4, so3, srm
        1. region d:239-304 [156007] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk