Structural Classification of Proteins
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Family: Prokaryotic type KH domain (KH-domain type II)

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Alpha-lytic protease prodomain-like [54805]
    core: alpha-beta(2)-(alpha)-beta; 2 layers: alpha/beta
  4. Superfamily: Prokaryotic type KH domain (KH-domain type II) [54814]
    Prokaryotic and eukaryotic domains share a KH-motif but have different topologies
    link to SUPERFAMILY database - Superfamily
  5. Family: Prokaryotic type KH domain (KH-domain type II) [54815]

Protein Domains:

  1. Ribosomal protein S3 N-terminal domain [54816]
    1. Thermus thermophilus [TaxId: 274] [54817] (36)
      SQ P80372
      1. 2uub picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1fjgc1
        complexed with 6mz, cm0, k, mg, par, zn
        1. region c:2-106 [139933] picpiclink
      2. 1fjg picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mg, par, scm, sry, zn
        1. region c:2-106 [38831] picpiclink
      3. 1j5e picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with unx, zn
        1. region c:2-106 [71544] picpiclink
      4. 2uxc picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1fjgc1
        complexed with k, mg, par, zn
        1. region c:2-106 [140004] picpiclink
      5. 2uuc picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1fjgc1
        complexed with 6mz, cm0, k, mg, par, zn
        1. region c:2-106 [139953] picpiclink
      6. 2uua picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1fjgc1
        complexed with 6mz, cm0, k, mg, par, zn
        1. region c:2-106 [139913] picpiclink
      7. 1xmq picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mg, par, t6a, zn
        1. region c:2-106 [115530] picpiclink
      8. 1n32 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mg, par, psu, zn
        1. region c:2-106 [79870] picpiclink
      9. 2uu9 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1fjgc1
        complexed with 6mz, cm0, k, mg, par, zn
        1. region c:2-106 [139893] picpiclink
      10. 1xnq picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mg, par, zn
        1. region c:2-106 [115604] picpiclink
      11. 1xnr picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mg, par, zn
        1. region c:2-106 [115626] picpiclink
      12. 1hr0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mg, zn
        1. region c:2-106 [38832] picpiclink
      13. 1hnz picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with hyg, mg, zn
        1. region c:2-106 [38833] picpiclink
      14. 2j02 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1fjgc1
        complexed with 5mu, mg, par, zn
        1. region c:2-106 [137866] picpiclink
      15. 2j00 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1fjgc1
        complexed with 5mu, mg, par, zn
        1. region c:2-106 [137839] picpiclink
      16. 1xmo picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mg, mnu, par, t6a, zn
        1. region c:2-106 [115500] picpiclink
      17. 1hnw picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mg, tac, zn
        1. region c:2-106 [38834] picpiclink
      18. 2e5l picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1fjgc1
        complexed with zn
        1. region c:2-106 [132025] picpiclink
      19. 1i94 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mg, wo2, zn
        1. region c:2-106 [61992] picpiclink
      20. 1hnx picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mg, pcy, zn
        1. region c:2-106 [38835] picpiclink
      21. 1n33 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mg, par, psu, zn
        1. region c:2-106 [79892] picpiclink
      22. 2hhh picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1fjgc1
        complexed with ksg
        1. region c:2-106 [136477] picpiclink
      23. 1i96 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mg, wo2, zn
        1. region c:2-106 [62036] picpiclink
      24. 1n34 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with zn
        1. region c:2-106 [79914] picpiclink
      25. 1i97 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mg, tac, wo2, zn
        1. region c:2-106 [62059] picpiclink
      26. 1n36 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with zn
        1. region c:2-106 [79937] picpiclink
      27. 1i95 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with ede, mg, wo2, zn
        1. region c:2-106 [62014] picpiclink
      28. 2f4v picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1fjgc1
        complexed with ab9, d2c, k, mg, zn
        1. region c:2-106 [132938] picpiclink
      29. 2hgp picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1fjgc1
        1. region f:2-106 [136421] picpiclink
      30. 2hgi picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1fjgc1
        1. region f:2-106 [136400] picpiclink
      31. 2hgr picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1fjgc1
        1. region f:2-106 [136442] picpiclink
      32. 2ow8 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1fjgc1
        complexed with 2mg, 4oc, 4su, 5mc, 5mu, 7mg, h2u, m2g, ma6, mia, psu, ur3
        1. region d:2-106 [139399] picpiclink
      33. 1yl4 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1fjgc1
        1. region f:2-106 [123597] picpiclink
      34. 2b64 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1fjgc1
        complexed with psu, yyg
        1. region c:2-106 [127933] picpiclink
      35. 2b9o picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1fjgc1
        complexed with psu, yyg
        1. region c:2-106 [128163] picpiclink
      36. 2b9m picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1fjgc1
        complexed with psu, yyg
        1. region c:2-106 [128126] picpiclink
    2. Mouse (Mus musculus) [TaxId: 10090] [117914] (1)
      SQ P23396 17-95
      1. 1wh9 picpic
        Structural genomics target
        1. chain a [114637] picpiclink
    3. Escherichia coli [TaxId: 562] [160236] (24)
      SQ P0A7V3 1-105
      1. 2qal picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY C:1-105
        complexed with mg, nmy
        1. region c:1-105 [150214] picpiclink
      2. 2qan picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY C:1-105
        complexed with mg, nmy
        1. region c:1-105 [150268] picpiclink
      3. 2qbf picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY C:1-105
        complexed with mg
        1. region c:1-105 [150488] picpiclink
      4. 2qbd picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY C:1-105
        complexed with mg
        1. region c:1-105 [150434] picpiclink
      5. 1vs5 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY C:1-105
        complexed with ksg, mg
        1. region c:1-105 [144436] picpiclink
      6. 3df1 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY C:1-105
        complexed with hyg, mg
        1. region c:1-105 [157603] picpiclink
      7. 3df3 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY C:1-105
        complexed with hyg, mg
        1. region c:1-105 [157657] picpiclink
      8. 1vs7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY C:1-105
        complexed with ksg, mg
        1. region c:1-105 [144477] picpiclink
      9. 2qoy picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY C:1-105
        complexed with mg, nmy, scm
        1. region c:1-105 [151091] picpiclink
      10. 2qp0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY C:1-105
        complexed with mg, nmy, scm
        1. region c:1-105 [151144] picpiclink
      11. 2avy picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        Representative structure
        complexed with mg
        1. region c:1-105 [144843] picpiclink
      12. 2aw7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY C:1-105
        complexed with mg
        1. region c:1-105 [144886] picpiclink
      13. 2qb9 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY C:1-105
        complexed with lll, mg
        1. region c:1-105 [150328] picpiclink
      14. 2qbb picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY C:1-105
        complexed with lll, mg
        1. region c:1-105 [150381] picpiclink
      15. 2i2p picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY C:1-105
        complexed with mg
        1. region c:1-105 [145421] picpiclink
      16. 2i2u picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY C:1-105
        complexed with mg
        1. region c:1-105 [145463] picpiclink
      17. 2qbh picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY C:1-105
        complexed with lll, mg
        1. region c:1-105 [150542] picpiclink
      18. 2qbj picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY C:1-105
        complexed with lll, mg
        1. region c:1-105 [150596] picpiclink
      19. 2qou picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY C:1-105
        complexed with mg, scm
        1. region c:1-105 [150985] picpiclink
      20. 2qow picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY C:1-105
        complexed with mg, scm
        1. region c:1-105 [151038] picpiclink
      21. 2z4m picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY C:1-105
        complexed with mg, par
        1. region c:1-105 [154106] picpiclink
      22. 2vho picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY C:1-105
        complexed with mg
        1. region c:1-105 [153123] picpiclink
      23. 2z4k picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY C:1-105
        complexed with mg, par
        1. region c:1-105 [154052] picpiclink
      24. 2vhp picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 2AVY C:1-105
        complexed with mg
        1. region c:1-105 [153145] picpiclink
    4. Canis lupus familiaris [TaxId: 9615] [160237] (1)
      1. 2zkq picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1wh9a_
        1. region c:17-95 [154591] picpiclink
  2. GTPase Era C-terminal domain [54818]
    1. Escherichia coli [TaxId: 562] [54819] (3)
      1. 1ega picpicxref
        complexed with so4
        1. region a:183-295 [38836] picpiclink
        2. region b:183-296 [38837] picpiclink
      2. 1x1l picpicxref
        automatically matched to d1egab2
        1. region x:183-295 [121591] picpiclink
      3. 1x18 picpicxrefxrefxrefxrefxref
        automatically matched to d1egab2
        complexed with du
        1. region x:183-295 [121578] picpiclink
    2. Thermus thermophilus [TaxId: 274] [117915] (1)
      SQ Q5SM23
      1. 1wf3 picpicxref
        Structural genomics target
        complexed with gnp, gol, mg
        1. region a:181-298 [114575] picpiclink
  3. Transcription factor NusA, C-terminal domains [69701]
    duplication: tandem repeat of two type II KH-domains
    1. Thermotoga maritima [TaxId: 2336] [69702] (2)
      1. 1hh2 picpicxrefxref
        1. region p:199-276 [65836] picpiclink
        2. region p:277-344 [65837] picpiclink
      2. 1l2f picpicxrefxref
        1. region a:199-276 [91045] picpiclink
        2. region a:277-344 [91046] picpiclink
    2. Mycobacterium tuberculosis [TaxId: 1773] [69703] (7)
      1. 2asb picpicxref
        automatically matched to d1k0ra2
        1. region a:184-262 [127245] picpiclink
      2. 2asb picpicxref
        automatically matched to d1k0ra3
        1. region a:263-329 [127246] picpiclink
      3. 1k0r picpicxrefxref
        complexed with so4
        1. region a:184-262 [67962] picpiclink
        2. region a:263-329 [67963] picpiclink
        3. region b:184-262 [67966] picpiclink
        4. region b:263-329 [67967] picpiclink
      4. 2atw picpicxrefxref
        automatically matched to d1k0ra2
        1. region a:184-262 [127310] picpiclink
      5. 2atw picpicxrefxref
        automatically matched to d1k0ra3
        1. region a:263-329 [127311] picpiclink
      6. 2atw picpicxrefxref
        automatically matched to d1k0ra2
        1. region c:184-262 [127313] picpiclink
      7. 2atw picpicxrefxref
        automatically matched to d1k0ra3
        1. region c:263-329 [127314] picpiclink
  4. Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6 [54803]
    the type of KH-domain fold (II or I) adopted by this domain is not ascertained yet
    1. Streptomyces antibioticus [TaxId: 1890] [54804] (2)
      1. 1e3h picpicxrefxrefxref
        partly disordered
        complexed with so4
        1. region a:579-632 [38810] picpiclink
      2. 1e3p picpicxrefxrefxrefxref
        partly disordered
        complexed with so4, wo4
        1. region a:579-634 [38811] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk