Structural Classification of Proteins
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Family: Cytidylytransferase

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Nucleotide-diphospho-sugar transferases [53447]
    3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214657; strand 6 is antiparallel to the rest
  4. Superfamily: Nucleotide-diphospho-sugar transferases [53448]
    link to SUPERFAMILY database - Superfamily
  5. Family: Cytidylytransferase [68901]

Protein Domains:

  1. 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) [64140]
    1. Escherichia coli [TaxId: 562] [64141] (6)
      1. 1i52 picpic
        complexed with ca, ctp, mg
        1. chain a [61767] picpiclink
      2. 1inj picpic
        complexed with ca
        1. chain a [62607] picpiclink
      3. 1vgt picpic
        structural genomics
        1. chain a [100604] picpiclink
        2. chain b [100605] picpiclink
      4. 1ini picpic
        complexed with cdm, mg
        1. chain a [66219] picpiclink
      5. 1h3m picpic
        complexed with cl, n2p; mutant
        1. chain a [90600] picpiclink
        2. chain b [90601] picpiclink
      6. 1vgu picpic
        structural genomics
        1. chain a [100606] picpiclink
        2. chain b [100607] picpiclink
    2. Neisseria gonorrhoeae [TaxId: 485] [102605] (2)
      1. 1vgw picpic
        structural genomics
        1. chain a [100612] picpiclink
        2. chain b [100613] picpiclink
        3. chain c [100614] picpiclink
        4. chain d [100615] picpiclink
        5. chain e [100616] picpiclink
        6. chain f [100617] picpiclink
      2. 1vgz picpic
        structural genomics
        complexed with so4
        1. chain a [100624] picpiclink
        2. chain b [100625] picpiclink
    3. Thermotoga maritima [TaxId: 2336] [117699] (1)
      SQ Q9X1B3
      1. 1vpa picpic
        Structural genomics target
        complexed with acy, ctp, mg
        1. chain a [113948] picpiclink
        2. chain b [113949] picpiclink
    4. Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702] [142690] (1)
      SQ P69834 75-300
      1. 1w77 picpic
        complexed with c5p, cd, cu; mutant
        1. region a:75-300 [120679] picpiclink
  2. CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase [64143]
    1. Escherichia coli, KpsU [TaxId: 562] [64144] (8)
      capsule-specific enzyme
      1. 1h7e picpic
        1. chain a [60717] picpiclink
        2. chain b [60718] picpiclink
      2. 1h7g picpic
        complexed with ctp, mg
        1. chain a [60721] picpiclink
        2. chain b [60722] picpiclink
      3. 1h7h picpic
        complexed with cdp
        1. chain a [60723] picpiclink
        2. chain b [60724] picpiclink
      4. 1h7f picpic
        complexed with c5p
        1. chain a [60719] picpiclink
        2. chain b [60720] picpiclink
      5. 1h7t picpic
        complexed with c5p, si2
        1. chain a [60730] picpiclink
        2. chain b [60731] picpiclink
      6. 1gqc picpic
        complexed with c5p, cmk, mg
        1. chain a [65468] picpiclink
        2. chain b [65469] picpiclink
      7. 1gq9 picpic
        complexed with ctp, mg
        1. chain a [65466] picpiclink
        2. chain b [65467] picpiclink
      8. 1h6j picpic
        1. chain a [60673] picpiclink
        2. chain b [60674] picpiclink
    2. Escherichia coli, KdsB [TaxId: 562] [102606] (1)
      1. 1vh1 picpic
        structural genomics
        1. chain a [100632] picpiclink
        2. chain b [100633] picpiclink
        3. chain c [100634] picpiclink
        4. chain d [100635] picpiclink
    3. Haemophilus influenzae [TaxId: 727] [102607] (2)
      1. 1vic picpic
        structural genomics
        1. chain a [100756] picpiclink
        2. chain b [100757] picpiclink
      2. 1vh3 picpic
        structural genomics
        complexed with cmk
        1. chain a [100637] picpiclink
        2. chain b [100638] picpiclink
        3. chain c [100639] picpiclink
  3. CTP:phosphocholine cytidylytransferase LicC [69569]
    1. Streptococcus pneumoniae [TaxId: 1313] [69570] (2)
      1. 1jyk picpic
        1. chain a [67458] picpiclink
      2. 1jyl picpic
        complexed with cdc, mg
        1. chain a [67459] picpiclink
        2. chain b [67460] picpiclink
        3. chain c [67461] picpiclink
        4. chain d [67462] picpiclink
  4. CMP acylneuraminate synthetase [53456]
    a sialic acid activating synthetase
    1. Neisseria meningitidis [TaxId: 487] [53457] (2)
      1. 1ezi picpic
        1. chain a [34512] picpiclink
        2. chain b [34513] picpiclink
      2. 1eyr picpic
        complexed with cdp
        1. chain a [34514] picpiclink
        2. chain b [34515] picpiclink
    2. Mouse (Mus musculus) [TaxId: 10090] [102608] (1)
      1. 1qwj picpic
        complexed with ncc
        1. chain a [96478] picpiclink
        2. chain b [96479] picpiclink
        3. chain c [96480] picpiclink
        4. chain d [96481] picpiclink
  5. Glucose-1-phosphate cytidylyltransferase RfbF [110689]
    1. Salmonella typhimurium [TaxId: 90371] [110690] (2)
      SQ P26396 2-257
      1. 1tzf picpic
        complexed with c5g, mg
        1. chain a [107476] picpiclink
      2. 1wvc picpic
        complexed with ctp, mg, ni
        1. chain a [114914] picpiclink
  6. IspD/IspF bifunctional enzyme, CDP-me synthase domain [117700]
    1. Campylobacter jejuni [TaxId: 197] [117701] (2)
      SQ Q9PM68
      1. 1w55 picpicxref
        complexed with c, edo, gpp, mg
        1. region a:3-207 [114197] picpiclink
      2. 1w57 picpicxref
        complexed with c, gpp, zn
        1. region a:3-207 [114199] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk