Structural Classification of Proteins
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Protein: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) from Escherichia coli [TaxId: 562]

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Nucleotide-diphospho-sugar transferases [53447]
    3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214657; strand 6 is antiparallel to the rest
  4. Superfamily: Nucleotide-diphospho-sugar transferases [53448]
    link to SUPERFAMILY database - Superfamily
  5. Family: Cytidylytransferase [68901]
  6. Protein: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) [64140]
  7. Species: Escherichia coli [TaxId: 562] [64141]

PDB Entry Domains:

  1. 1i52 picpic
    complexed with ca, ctp, mg
    1. chain a [61767] picpiclink
  2. 1inj picpic
    complexed with ca
    1. chain a [62607] picpiclink
  3. 1vgt picpic
    structural genomics
    1. chain a [100604] picpiclink
    2. chain b [100605] picpiclink
  4. 1ini picpic
    complexed with cdm, mg
    1. chain a [66219] picpiclink
  5. 1h3m picpic
    complexed with cl, n2p; mutant
    1. chain a [90600] picpiclink
    2. chain b [90601] picpiclink
  6. 1vgu picpic
    structural genomics
    1. chain a [100606] picpiclink
    2. chain b [100607] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk