Structural Classification of Proteins
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Protein: Ribosome biogenesis protein NEP1 from Methanococcus jannaschii [TaxId: 2190]

SQ Q57977 2-205

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: alpha/beta knot [75216]
    core: 3 layers: a/b/a, parallel beta-sheet of 5 strands, order 21435; contains a deep trefoil knot
  4. Superfamily: alpha/beta knot [75217]
    known or predicted SAM-dependent methytransferases including the SPOUT 'sequence' superfamily
    all known members have dimeric structures
    link to SUPERFAMILY database - Superfamily
  5. Family: EMG1/NEP1-like [159513]
    Pfam 03587; structurally most similar to the AF1056-like family, but more decorated
  6. Protein: Ribosome biogenesis protein NEP1 [159514]
  7. Species: Methanococcus jannaschii [TaxId: 2190] [159515]
    SQ Q57977 2-205

PDB Entry Domains:

  1. 3bbd picpic
    complexed with gol, sah
    1. region a:2-205 [155061] picpiclink
  2. 3bbd picpic
    automatically matched to 3BBD A:2-205
    complexed with gol, sah
    1. region b:2-205 [155062] picpiclink
  3. 3bbe picpic
    automatically matched to 3BBD A:2-205
    complexed with gol
    1. region a:2-205 [155063] picpiclink
  4. 3bbe picpic
    automatically matched to 3BBD A:2-205
    complexed with gol
    1. region b:2-205 [155064] picpiclink
  5. 3bbh picpic
    automatically matched to 3BBD A:2-205
    complexed with gol, sfg
    1. region a:2-205 [155071] picpiclink
  6. 3bbh picpic
    automatically matched to 3BBD A:2-205
    complexed with gol, sfg
    1. region b:2-205 [155072] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk