Structural Classification of Proteins
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Superfamily: PIN domain-like

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: PIN domain-like [88722]
    3 layers, a/b/a; core: parallel beta-sheet of 5 strands, order 32145
  4. Superfamily: PIN domain-like [88723]
    link to SUPERFAMILY database - Superfamily

Families:

  1. PIN domain [89619] (7)
    Pfam 01850
    1. Hypothetical protein AF0591 [89620]
      1. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [89621] (1)
        1. 1o4w picpic
          structural genomics
          complexed with mse
          1. chain a [86629] picpiclink
    2. Hypothetical protein PAE2754 [102270]
      1. Archaeon Pyrobaculum aerophilum [TaxId: 13773] [102271] (2)
        1. 1v8p picpic
          structural genomics
          complexed with cl; mutant
          1. chain a [100519] picpiclink
          2. chain b [100520] picpiclink
          3. chain c [100521] picpiclink
          4. chain d [100522] picpiclink
          5. chain e [100523] picpiclink
          6. chain f [100524] picpiclink
          7. chain g [100525] picpiclink
          8. chain h [100526] picpiclink
          9. chain i [100527] picpiclink
          10. chain j [100528] picpiclink
          11. chain k [100529] picpiclink
          12. chain l [100530] picpiclink
        2. 1v8o picpic
          complexed with cl; mutant
          1. chain a [100511] picpiclink
          2. chain b [100512] picpiclink
          3. chain c [100513] picpiclink
          4. chain d [100514] picpiclink
          5. chain e [100515] picpiclink
          6. chain f [100516] picpiclink
          7. chain g [100517] picpiclink
          8. chain h [100518] picpiclink
    3. Hypothetical protein AF1683 [117492]
      1. Archaeoglobus fulgidus [TaxId: 2234] [117493] (1)
        SQ O28590
        1. 1w8i picpic
          Structural genomics target
          1. chain a [114368] picpiclink
    4. Trafficking protein B [142110]
      1. Neisseria gonorrhoeae [TaxId: 485] [142111] (9)
        SQ Q5F882 1-138! SQ Q9RF91 1-138
        1. 2h1c picpic
          complexed with the C-terminal segment of Trafficking protein A (chain B)
          complexed with act, mg, so4
          1. region a:1-138 [135944] picpiclink
        2. 2bsq picpicxrefxrefxrefxref
          complexed with 5iu; mutant
          1. region a:1-138 [129098] picpiclink
        3. 2bsq picpicxrefxrefxrefxref
          automatically matched to 2BSQ A:1-138
          complexed with 5iu; mutant
          1. region b:1-138 [129099] picpiclink
        4. 2bsq picpicxrefxrefxrefxref
          automatically matched to 2BSQ A:1-138
          complexed with 5iu; mutant
          1. region c:1-138 [129100] picpiclink
        5. 2bsq picpicxrefxrefxrefxref
          automatically matched to 2BSQ A:1-138
          complexed with 5iu; mutant
          1. region d:1-138 [129101] picpiclink
        6. 2h1o picpicxrefxrefxrefxref
          automatically matched to 2BSQ A:1-138
          complexed with 5iu; mutant
          1. region a:1-138 [135971] picpiclink
        7. 2h1o picpicxrefxrefxrefxref
          automatically matched to 2BSQ A:1-138
          complexed with 5iu; mutant
          1. region b:1-138 [135972] picpiclink
        8. 2h1o picpicxrefxrefxrefxref
          automatically matched to 2BSQ A:1-138
          complexed with 5iu; mutant
          1. region c:1-138 [135973] picpiclink
        9. 2h1o picpicxrefxrefxrefxref
          automatically matched to 2BSQ A:1-138
          complexed with 5iu; mutant
          1. region d:1-138 [135974] picpiclink
    5. Hypothetical protein PH0500 [142112]
      1. Pyrococcus horikoshii [TaxId: 53953] [142113] (4)
        SQ O58236 2-149
        1. 1v96 picpic
          complexed with gol
          1. region a:2-149 [119877] picpiclink
        2. 1v96 picpic
          automatically matched to 1V96 A:2-149
          complexed with gol
          1. region b:2-145 [119878] picpiclink
        3. 1ye5 picpic
          automatically matched to 1V96 A:2-149
          1. region a:2-143 [123008] picpiclink
        4. 1ye5 picpic
          automatically matched to 1V96 A:2-149
          1. region b:2-148 [123009] picpiclink
    6. Conserved hypothetical protein PAE0151 [142114]
      1. Pyrobaculum aerophilum [TaxId: 13773] [142115] (1)
        SQ Q8ZZP3 1-130
        1. 2fe1 picpic
          complexed with ca, cl, mn; mutant
          1. region a:1-130 [133322] picpiclink
    7. Hypothetical protein PF0355 [142116]
      PH0500 ortholog
      1. Pyrococcus furiosus [TaxId: 2261] [142117] (4)
        SQ Q8U3V0 2-148
        1. 1y82 picpic
          complexed with unx
          1. region a:2-148 [122732] picpiclink
        2. 1y82 picpic
          automatically matched to 1Y82 A:2-148
          complexed with unx
          1. region b:3-148 [122733] picpiclink
        3. 1y82 picpic
          automatically matched to 1Y82 A:2-148
          complexed with unx
          1. region c:3-148 [122734] picpiclink
        4. 1y82 picpic
          automatically matched to 1Y82 A:2-148
          complexed with unx
          1. region d:3-141 [122735] picpiclink
  2. 5' to 3' exonuclease catalytic domain [53045] (8)
    contains an alpha-helical arch and additional strand 6 antiparallel to the rest; strand order 321456; similarity to the resolvase-like fold
    1. T4 RNase H [53046]
      1. Bacteriophage T4 [TaxId: 10665] [53047] (2)
        1. 1tfr picpicxref
          complexed with mg
          1. region a:12-180 [33351] picpiclink
        2. 2ihn picpicxref
          automatically matched to d1tfra2
          mutant
          1. region a:12-180 [147680] picpiclink
    2. 5' to 3' exonuclease domain of DNA polymerase Taq [53048]
      1. Thermus aquaticus [TaxId: 271] [53049] (4)
        1. 1cmw picpicxrefxrefxref
          1. region a:10-173 [33354] picpiclink
        2. 1bgx picpicxrefxrefxrefxrefxrefxrefxref
          1. region t:1-173 [33353] picpiclink
        3. 1taq picpicxrefxrefxref
          complexed with bgl, zn; mutant
          1. region a:10-173 [33352] picpiclink
        4. 1tau picpicxrefxrefxref
          protein/DNA complex; complexed with bgl, zn
          1. region a:10-173 [33355] picpiclink
    3. T5 5'-exonuclease [53050]
      1. Bacteriophage T5 [TaxId: 10726] [53051] (4)
        1. 1xo1 picpicxref
          mutant
          1. region a:19-185 [33356] picpiclink
          2. region b:19-185 [33357] picpiclink
        2. 1exn picpicxref
          mutant
          1. region a:20-185 [33358] picpiclink
          2. region b:20-185 [33359] picpiclink
        3. 1ut8 picpicxref
          complexed with zn
          1. region a:20-185 [99909] picpiclink
          2. region b:20-185 [99911] picpiclink
        4. 1ut5 picpicxref
          complexed with mn
          1. region a:20-185 [99903] picpiclink
          2. region b:20-185 [99905] picpiclink
    4. Flap endonuclease-1 (Fen-1 nuclease) [53052]
      1. Archaeon Methanococcus jannaschii [TaxId: 2190] [53053] (2)
        1. 1a77 picpicxref
          complexed with mg
          1. region a:2-208 [33360] picpiclink
        2. 1a76 picpicxref
          complexed with mn
          1. region a:2-208 [33361] picpiclink
      2. Archaeon Pyrococcus horikoshii [TaxId: 53953] [82436] (1)
        1. 1mc8 picpicxref
          mutant
          1. region a:2-220 [78946] picpiclink
          2. region b:2-220 [78948] picpiclink
      3. Archaeon Pyrococcus furiosus [TaxId: 2261] [53055] (1)
        1. 1b43 picpicxref
          1. region a:1-219 [33362] picpiclink
          2. region b:1-219 [33363] picpiclink
      4. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [102272] (2)
        1. 1rxw picpicxref
          1. region a:3-219 [98060] picpiclink
        2. 1rxv picpicxref
          1. region a:4-219 [98056] picpiclink
          2. region b:4-219 [98058] picpiclink
      5. Human (Homo sapiens) [TaxId: 9606] [142118] (3)
        SQ P39748 2-217
        1. 1ul1 picpicxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with mg
          1. region x:2-217 [119691] picpiclink
        2. 1ul1 picpicxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 1UL1 X:2-217
          complexed with mg
          1. region y:2-217 [119693] picpiclink
        3. 1ul1 picpicxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 1UL1 X:2-217
          complexed with mg
          1. region z:2-217 [119695] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk