Structural Classification of Proteins
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Protein: Bacterial alpha-amylase from Bacillus sp., ksm-k38 [TaxId: 1409]

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: TIM beta/alpha-barrel [51350]
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. Superfamily: (Trans)glycosidases [51445]
    link to SUPERFAMILY database - Superfamily
  5. Family: Amylase, catalytic domain [51446]
    members of the family may contain various insert subdomains
    in alpha-amylases and closer relatives this domain is usually followed by a common all-beta domain
  6. Protein: Bacterial alpha-amylase [51447]
  7. Species: Bacillus sp., ksm-k38 [TaxId: 1409] [89463]

PDB Entry Domains:

  1. 1ud2 picpicxref
    complexed with gol, na
    1. region a:1-390 [88470] picpiclink
  2. 1ud4 picpicxref
    complexed with na
    1. region a:1-390 [88474] picpiclink
  3. 1ud3 picpicxref
    complexed with na; mutant
    1. region a:1-390 [88472] picpiclink
  4. 1ud6 picpicxref
    complexed with k
    1. region a:1-390 [88478] picpiclink
  5. 1ud5 picpicxref
    complexed with na, rb
    1. region a:1-390 [88476] picpiclink
  6. 1ud8 picpicxref
    complexed with na
    1. region a:1-390 [88480] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk