Structural Classification of Proteins
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Family: Phage ssDNA-binding proteins

barrel, open; n*=5, S*=8; the members' structures vary greater that those from cellular organisms

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: OB-fold [50198]
    barrel, closed or partly opened n=5, S=10 or S=8; greek-key
  4. Superfamily: Nucleic acid-binding proteins [50249]
    link to SUPERFAMILY database - Superfamily
  5. Family: Phage ssDNA-binding proteins [50315]
    barrel, open; n*=5, S*=8; the members' structures vary greater that those from cellular organisms

Protein Domains:

  1. Gene V protein [50316]
    1. Enterobacteria phage M13, including coliphage f1 [TaxId: 10870] [50317] (19)
      1. 1gvp picpic
        1. chain a [25369] picpiclink
      2. 1vqb picpic
        1. chain a [25370] picpiclink
      3. 1vqi picpic
        mutant
        1. chain a [25373] picpiclink
      4. 1vqa picpic
        mutant
        1. chain a [25377] picpiclink
      5. 1vqf picpic
        mutant
        1. chain a [25372] picpiclink
      6. 1vqg picpic
        mutant
        1. chain a [25376] picpiclink
      7. 1vqh picpic
        mutant
        1. chain a [25379] picpiclink
      8. 1vqj picpic
        mutant
        1. chain a [25374] picpiclink
      9. 1vqd picpic
        mutant
        1. chain a [25375] picpiclink
      10. 1vqe picpic
        mutant
        1. chain a [25380] picpiclink
      11. 1vqc picpic
        mutant
        1. chain a [25378] picpiclink
      12. 1gkh picpic
        mutant
        1. chain a [25371] picpiclink
      13. 1ae3 picpic
        mutant
        1. chain a [25381] picpiclink
      14. 1yhb picpic
        mutant
        1. chain a [25383] picpiclink
      15. 1ae2 picpic
        mutant
        1. chain a [25382] picpiclink
      16. 1yha picpic
        mutant
        1. chain a [25384] picpiclink
        2. chain b [25385] picpiclink
      17. 2gvb picpic
        mutant
        1. chain a [25387] picpiclink
        2. chain b [25388] picpiclink
      18. 2gva picpic
        mutant
        1. chain a [25389] picpiclink
        2. chain b [25390] picpiclink
      19. 2gn5 picpic
        incorrect structure
        1. chain a [25386] picpiclink
    2. Pseudomonas phage Pf3 [TaxId: 10872] [50318] (1)
      1. 1pfs picpic
        mutant
        1. chain a [25391] picpiclink
        2. chain b [25392] picpiclink
  2. Gene 32 protein (gp32) core [50319]
    contains a Zn-finger subdomain, res. 63-111
    1. Bacteriophage T4 [TaxId: 10665] [50320] (1)
      1. 1gpc picpic
        complexed with zn
        1. chain a [25393] picpiclink
    2. Enterobacteria phage RB69 [TaxId: 12353] [159108] (3)
      SQ Q7Y265 32-241
      1. 2a1k picpic
        automatically matched to 2ATQ B:32-241
        complexed with zn
        1. region a:32-241 [146038] picpiclink
      2. 2a1k picpic
        automatically matched to 2ATQ B:32-241
        complexed with zn
        1. region b:32-240 [146039] picpiclink
      3. 2atq picpicxrefxref
        complexed with gdp, zn; mutant
        1. region b:32-241 [144839] picpiclink
  3. gp2.5 [63774]
    1. Bacteriophage T7 [TaxId: 10760] [63775] (1)
      1. 1je5 picpic
        complexed with ca
        1. chain a [62909] picpiclink
        2. chain b [62910] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk