Protein: Major capsid protein vp54 from Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]

a large, lipid-containing, DNA virus

Lineage:

1. Root: scop
2. Class: All beta proteins [48724]
3. Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632]
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
4. Superfamily: Group II dsDNA viruses VP [49749]
   duplication: consists of two domains of this fold packed together like the nucleoplasmin subunits
   trimeric; in the trimers, the domains are arranged around pseudo six-fold axis
   uperfamily
5. Family: Major capsid protein vp54 [82013]
6. Protein: Major capsid protein vp54 [82014]
7. Species: Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506] [82015]
   a large, lipid-containing, DNA virus

PDB Entry Domains:

1. 1m3y
   complexed with hg, man, nag
   1. region a:25-221 [78579]
   2. region a:222-437 [78580]
   3. region b:25-221 [78581]
   4. region b:222-437 [78582]
   5. region c:25-221 [78583]
   6. region c:222-437 [78584]
   7. region d:25-221 [78585]
   8. region d:222-437 [78586]
2. 1j5q
   complexed with hg, man, nag
   1. region a:25-221 [77084]
   2. region a:222-437 [77085]
   3. region b:25-221 [77086]
   4. region b:222-437 [77087]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk