Structural Classification of Proteins
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Family: Major capsid protein vp54

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632]
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. Superfamily: Group II dsDNA viruses VP [49749]
    duplication: consists of two domains of this fold packed together like the nucleoplasmin subunits
    trimeric; in the trimers, the domains are arranged around pseudo six-fold axis
    link to SUPERFAMILY database - Superfamily
  5. Family: Major capsid protein vp54 [82013]

Protein Domains:

  1. Major capsid protein vp54 [82014]
    1. Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506] [82015] (2)
      a large, lipid-containing, DNA virus
      1. 1m3y picpic
        complexed with hg, man, nag
        1. region a:25-221 [78579] picpiclink
        2. region a:222-437 [78580] picpiclink
        3. region b:25-221 [78581] picpiclink
        4. region b:222-437 [78582] picpiclink
        5. region c:25-221 [78583] picpiclink
        6. region c:222-437 [78584] picpiclink
        7. region d:25-221 [78585] picpiclink
        8. region d:222-437 [78586] picpiclink
      2. 1j5q picpic
        complexed with hg, man, nag
        1. region a:25-221 [77084] picpiclink
        2. region a:222-437 [77085] picpiclink
        3. region b:25-221 [77086] picpiclink
        4. region b:222-437 [77087] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk