Structural Classification of Proteins

Superfamily: Group II dsDNA viruses VP

: duplication: consists of two domains of this fold packed together like the nucleoplasmin subunits
trimeric; in the trimers, the domains are arranged around pseudo six-fold axis
uperfamily

Lineage:

Root: scop
Class: All beta proteins [48724]
Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632]
sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
Superfamily: Group II dsDNA viruses VP [49749]
duplication: consists of two domains of this fold packed together like the nucleoplasmin subunits
trimeric; in the trimers, the domains are arranged around pseudo six-fold axis
uperfamily

Families:

Coat protein p3 [49750] (1)
1. Coat protein p3 [63403]
  1. Bacteriophage prd1 [TaxId: 10658] [49752] (3)
    1. 1hx6
      complexed with cl, mpd, na
      1. region a:15-244 [58995]
      2. region a:245-384 [58996]
      3. region b:11-244 [58997]
      4. region b:245-384 [58998]
      5. region c:14-244 [58999]
      6. region c:245-384 [59000]
    2. 1cjd
      1. region a:15-244 [58963]
      2. region a:245-383 [58964]
      3. region b:13-244 [58965]
      4. region b:245-384 [58966]
      5. region c:16-244 [58967]
      6. region c:247-384 [58968]
    3. 1hqn
      1. region a:16-244 [58989]
      2. region a:245-384 [58990]
      3. region b:15-244 [58991]
      4. region b:245-384 [58992]
      5. region c:14-244 [58993]
      6. region c:245-385 [58994]
Major capsid protein vp54 [82013] (1)
1. Major capsid protein vp54 [82014]
  1. Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506] [82015] (2)
    a large, lipid-containing, DNA virus
    1. 1m3y
      complexed with hg, man, nag
      1. region a:25-221 [78579]
      2. region a:222-437 [78580]
      3. region b:25-221 [78581]
      4. region b:222-437 [78582]
      5. region c:25-221 [78583]
      6. region c:222-437 [78584]
      7. region d:25-221 [78585]
      8. region d:222-437 [78586]
    2. 1j5q
      complexed with hg, man, nag
      1. region a:25-221 [77084]
      2. region a:222-437 [77085]
      3. region b:25-221 [77086]
      4. region b:222-437 [77087]
Adenovirus hexon [49753] (2)
each domain is heavily decorated with many insertions
1. Adenovirus hexon [63404]
  1. Human adenovirus type 2 [TaxId: 10515] [49755] (1)
    1. 1p2z
      complexed with cit
      1. region a:5-650 [93962]
      2. region a:651-962 [93963]
  2. Human adenovirus type 5 [TaxId: 28285] [49756] (25)
    1. 1p30
      1. region a:5-636 [93964]
      2. region a:637-946 [93965]
    2. 2bvi
      automatically matched to d1p30a1
      1. region f:5-636 [129258]
    3. 2bvi
      automatically matched to d1p30a2
      1. region f:637-946 [129259]
    4. 2bvi
      automatically matched to d1p30a1
      1. region g:5-636 [129260]
    5. 2bvi
      automatically matched to d1p30a2
      1. region g:637-946 [129261]
    6. 2bvi
      automatically matched to d1p30a1
      1. region h:5-636 [129262]
    7. 2bvi
      automatically matched to d1p30a2
      1. region h:637-946 [129263]
    8. 2bvi
      automatically matched to d1p30a1
      1. region i:5-636 [129264]
    9. 2bvi
      automatically matched to d1p30a2
      1. region i:637-946 [129265]
    10. 2bvi
      automatically matched to d1p30a1
      1. region j:5-636 [129266]
    11. 2bvi
      automatically matched to d1p30a2
      1. region j:637-946 [129267]
    12. 2bvi
      automatically matched to d1p30a1
      1. region k:5-636 [129268]
    13. 2bvi
      automatically matched to d1p30a2
      1. region k:637-946 [129269]
    14. 2bvi
      automatically matched to d1p30a1
      1. region l:5-636 [129270]
    15. 2bvi
      automatically matched to d1p30a2
      1. region l:637-946 [129271]
    16. 2bvi
      automatically matched to d1p30a1
      1. region m:5-636 [129272]
    17. 2bvi
      automatically matched to d1p30a2
      1. region m:637-946 [129273]
    18. 2bvi
      automatically matched to d1p30a1
      1. region n:5-636 [129274]
    19. 2bvi
      automatically matched to d1p30a2
      1. region n:637-946 [129275]
    20. 2bvi
      automatically matched to d1p30a1
      1. region o:5-636 [129276]
    21. 2bvi
      automatically matched to d1p30a2
      1. region o:637-946 [129277]
    22. 2bvi
      automatically matched to d1p30a1
      1. region p:5-636 [129278]
    23. 2bvi
      automatically matched to d1p30a2
      1. region p:637-946 [129279]
    24. 2bvi
      automatically matched to d1p30a1
      1. region q:5-636 [129280]
    25. 2bvi
      automatically matched to d1p30a2
      1. region q:637-946 [129281]