Structural Classification of Proteins
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Superfamily: RmlC-like cupins

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Double-stranded beta-helix [51181]
    one turn of helix is made by two pairs of antiparallel strands linked with short turns
    has appearance of a sandwich of distinct architecture and jelly-roll topology
  4. Superfamily: RmlC-like cupins [51182]
    link to SUPERFAMILY database - Superfamily

Families:

  1. dTDP-sugar isomerase [51183] (9)
    1. dTDP-4-dehydrorhamnose 3,5-epimerase RmlC [51184]
      synonym: dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase
      1. Salmonella typhimurium [TaxId: 90371] [51185] (2)
        1. 1dzr picpic
          complexed with gol, so4
          1. chain a [28076] picpiclink
          2. chain b [28077] picpiclink
        2. 1dzt picpic
          complexed with aty, gol, so4, tpe
          1. chain a [28078] picpiclink
          2. chain b [28079] picpiclink
      2. Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262] [51186] (2)
        1. 1ep0 picpic
          1. chain a [28080] picpiclink
        2. 1epz picpic
          complexed with tyd
          1. chain a [28081] picpiclink
      3. Streptococcus suis [TaxId: 1307] [89402] (7)
        1. 1nxm picpic
          1. chain a [86385] picpiclink
          2. chain b [86386] picpiclink
        2. 2ixl picpic
          automatically matched to d1nzca_
          complexed with ni, trh
          1. region a:2-197 [137772] picpiclink
        3. 2ixl picpic
          automatically matched to d1nzca_
          complexed with ni, trh
          1. region b:3-197 [137773] picpiclink
        4. 2ixl picpic
          automatically matched to d1nzca_
          complexed with ni, trh
          1. region c:2-197 [137774] picpiclink
        5. 2ixl picpic
          automatically matched to d1nzca_
          complexed with ni, trh
          1. region d:2-197 [137775] picpiclink
        6. 1nyw picpic
          complexed with dau
          1. chain a [86429] picpiclink
          2. chain b [86430] picpiclink
        7. 1nzc picpic
          complexed with ni, tdx
          1. chain a [86445] picpiclink
          2. chain b [86446] picpiclink
          3. chain c [86447] picpiclink
          4. chain d [86448] picpiclink
      4. Mycobacterium tuberculosis [TaxId: 1773] [101971] (6)
        1. 2ixc picpic
          automatically matched to d1upia_
          complexed with trh
          1. region a:1-198 [137765] picpiclink
        2. 2ixc picpic
          automatically matched to d1upia_
          complexed with trh
          1. region b:1-198 [137766] picpiclink
        3. 2ixc picpic
          automatically matched to d1upia_
          complexed with trh
          1. region c:1-198 [137767] picpiclink
        4. 2ixc picpic
          automatically matched to d1upia_
          complexed with trh
          1. region d:1-198 [137768] picpiclink
        5. 1upi picpic
          1. chain a [99757] picpiclink
        6. 1pm7 picpic
          complexed with act, gol
          1. chain a [94895] picpiclink
          2. chain b [94896] picpiclink
      5. Pseudomonas aeruginosa [TaxId: 287] [101972] (4)
        1. 2ixh picpic
          automatically matched to d1rtva_
          complexed with trh
          1. region a:1-184 [137769] picpiclink
        2. 2ixh picpic
          automatically matched to d1rtva_
          complexed with trh
          1. region b:1-184 [137770] picpiclink
        3. 2ixj picpic
          automatically matched to d1rtva_
          complexed with srt
          1. region a:1-184 [137771] picpiclink
        4. 1rtv picpic
          complexed with tar
          1. chain a [97822] picpiclink
      6. Archaeon Sulfolobus tokodaii [TaxId: 111955] [141586] (2)
        SQ Q96Z62 1-176
        1. 1wlt picpic
          1. region a:1-176 [121013] picpiclink
        2. 1wlt picpic
          automatically matched to 1WLT A:1-176
          1. region b:1-176 [121014] picpiclink
    2. dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD [101973]
      1. Amycolatopsis orientalis [TaxId: 31958] [101974] (2)
        SQ O52806
        1. 1oi6 picpic
          complexed with gol, tmp
          1. chain a [103940] picpiclink
          2. chain b [103941] picpiclink
        2. 1ofn picpic
          complexed with gol
          1. chain a [92830] picpiclink
          2. chain b [92831] picpiclink
    3. Novobiocin biosynthesis protein NovW [141587]
      1. Streptomyces caeruleus [TaxId: 195949] [141588] (1)
        SQ Q9L9E5 1-190
        1. 2c0z picpic
          complexed with edo, so4
          1. region a:1-190 [129615] picpiclink
    4. dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA [159287]
      1. Aneurinibacillus thermoaerophilus [TaxId: 143495] [159288] (8)
        SQ Q6T1W8 1-136! SQ Q6T1W8 2-136
        1. 2pa7 picpic
          complexed with cl, edo, tyd
          1. region a:2-136 [149339] picpiclink
        2. 2pa7 picpic
          automatically matched to 2PA7 A:2-136
          complexed with cl, edo, tyd
          1. region b:2-135 [149340] picpiclink
        3. 2pak picpic
          complexed with tyd; mutant
          1. region a:2-136 [149346] picpiclink
        4. 2pae picpic
          complexed with tyd; mutant
          1. region a:1-136 [149341] picpiclink
        5. 2pam picpic
          complexed with tyd; mutant
          1. region a:2-136 [149348] picpiclink
        6. 2pae picpic
          automatically matched to 2PAE A:1-136
          complexed with tyd; mutant
          1. region b:2-135 [149342] picpiclink
        7. 2pak picpic
          automatically matched to 2PAK A:2-136
          complexed with tyd; mutant
          1. region b:2-135 [149347] picpiclink
        8. 2pam picpic
          automatically matched to 2PAM A:2-136
          complexed with tyd; mutant
          1. region b:2-135 [149349] picpiclink
  2. Glucose-6-phosphate isomerase, GPI [89403] (2)
    1. Glucose-6-phosphate isomerase, GPI [89404]
      Type II phosphoglucose isomerase
      1. Archaeon Pyrococcus furiosus [TaxId: 2261] [89405] (6)
        SQ P83194
        1. 1x82 picpic
          complexed with pa5
          1. chain a [114955] picpiclink
        2. 1x7n picpic
          complexed with mn, pa5
          1. chain a [114933] picpiclink
        3. 1qxr picpic
          complexed with ni, pa5
          1. chain a [96552] picpiclink
          2. chain b [96553] picpiclink
        4. 1qxj picpic
          complexed with ni
          1. chain a [96530] picpiclink
          2. chain b [96531] picpiclink
        5. 1qy4 picpic
          complexed with 6pg, ni
          1. chain a [96571] picpiclink
          2. chain b [96572] picpiclink
        6. 1x8e picpic
          1. chain a [114958] picpiclink
          2. chain b [114959] picpiclink
      2. Archaeon Thermococcus litoralis [TaxId: 2265] [101975] (11)
        1. 2gc0 picpic
          automatically matched to d1j3pa_
          complexed with pan, zn
          1. region a:0-186 [134926] picpiclink
        2. 2gc0 picpic
          automatically matched to d1j3pa_
          complexed with pan, zn
          1. region b:0-186 [134927] picpiclink
        3. 2gc1 picpic
          automatically matched to d1j3pa_
          complexed with s6p, zn
          1. region a:0-186 [134928] picpiclink
        4. 2gc1 picpic
          automatically matched to d1j3pa_
          complexed with s6p, zn
          1. region b:0-186 [134929] picpiclink
        5. 2gc3 picpic
          automatically matched to d1j3pa_
          complexed with m6p, zn
          1. region a:0-186 [134932] picpiclink
        6. 2gc3 picpic
          automatically matched to d1j3pa_
          complexed with m6p, zn
          1. region b:0-186 [134933] picpiclink
        7. 1j3q picpic
          complexed with fe
          1. chain a [90821] picpiclink
          2. chain b [90822] picpiclink
        8. 1j3p picpic
          complexed with fe
          1. chain a [90819] picpiclink
          2. chain b [90820] picpiclink
        9. 2gc2 picpic
          automatically matched to d1j3pa_
          complexed with fpc, zn
          1. region a:0-186 [134930] picpiclink
        10. 2gc2 picpic
          automatically matched to d1j3pa_
          complexed with fpc, zn
          1. region b:0-186 [134931] picpiclink
        11. 1j3r picpic
          complexed with 6pg, fe
          1. chain a [90823] picpiclink
          2. chain b [90824] picpiclink
  3. Hypothetical protein TM1112 [89406] (1)
    1. Hypothetical protein TM1112 [89407]
      1. Thermotoga maritima [TaxId: 2336] [89408] (2)
        1. 1o5u picpic
          structural genomics
          complexed with unl
          1. chain a [92518] picpiclink
          2. chain b [92519] picpiclink
        2. 1lkn picpic
          structural genomics
          1. chain a [84624] picpiclink
  4. TM1287-like [89409] (4)
    1. Hypothetical protein TM1287 [89410]
      1. Thermotoga maritima [TaxId: 2336] [89411] (1)
        1. 1o4t picpic
          structural genomics
          complexed with mn, oxl
          1. chain a [86622] picpiclink
          2. chain b [86623] picpiclink
    2. Hypothetical protein TTHA0104 [117310]
      1. Thermus thermophilus [TaxId: 274] [117311] (3)
        SQ Q5SM39
        1. 1v70 picpic
          Structural genomics target
          complexed with na
          1. chain a [113555] picpiclink
        2. 2dct picpic
          complexed with cl, na
          1. region a:1-105 [131386] picpiclink
        3. 2dct picpic
          automatically matched to 2DCT A:1-105
          complexed with cl, na
          1. region b:1-105 [131387] picpiclink
    3. Hypothetical protein TM1010 [141589]
      1. Thermotoga maritima [TaxId: 2336] [141590] (4)
        SQ Q9X0A3 2-135
        1. 2f4p picpic
          complexed with edo, unl
          1. region a:2-135 [132933] picpiclink
        2. 2f4p picpic
          automatically matched to 2F4P A:2-135
          complexed with edo, unl
          1. region b:4-135 [132934] picpiclink
        3. 2f4p picpic
          automatically matched to 2F4P A:2-135
          complexed with edo, unl
          1. region c:3-135 [132935] picpiclink
        4. 2f4p picpic
          automatically matched to 2F4P A:2-135
          complexed with edo, unl
          1. region d:3-135 [132936] picpiclink
    4. Hypothetical protein SPy1581 [141591]
      1. Streptococcus pyogenes [TaxId: 1314] [141592] (1)
        SQ Q99YR1 1-112
        1. 1yhf picpic
          1. region a:1-112 [123176] picpiclink
  5. TM1459-like [101976] (2)
    1. Hypothetical protein TM1459 [101977]
      1. Thermotoga maritima [TaxId: 2336] [101978] (1)
        1. 1vj2 picpic
          structural genomics
          complexed with mn, unl
          1. chain a [100796] picpiclink
          2. chain b [100797] picpiclink
    2. Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain [141593]
      1. Streptomyces wedmorensis [TaxId: 43759] [141594] (20)
        SQ Q56185 77-198
        1. 2bnm picpicxrefxref
          automatically matched to 1ZZ6 A:77-198
          complexed with so4, zn
          1. region a:77-198 [128836] picpiclink
        2. 2bnm picpicxrefxref
          automatically matched to 1ZZ6 A:77-198
          complexed with so4, zn
          1. region b:77-198 [128838] picpiclink
        3. 2bno picpicxrefxref
          automatically matched to 1ZZ6 A:77-198
          complexed with hg, so4, zn
          1. region a:77-198 [128844] picpiclink
        4. 2bno picpicxrefxref
          automatically matched to 1ZZ6 A:77-198
          complexed with hg, so4, zn
          1. region b:77-198 [128846] picpiclink
        5. 1zzc picpicxrefxref
          automatically matched to 1ZZ6 A:77-198
          complexed with co, trs
          1. region a:77-198 [125897] picpiclink
        6. 1zzc picpicxrefxref
          automatically matched to 1ZZ6 A:77-198
          complexed with co, trs
          1. region b:77-198 [125899] picpiclink
        7. 1zz7 picpicxrefxref
          automatically matched to 1ZZ6 A:77-198
          complexed with fe2, s0h
          1. region a:77-198 [125877] picpiclink
        8. 1zz7 picpicxrefxref
          automatically matched to 1ZZ6 A:77-198
          complexed with fe2, s0h
          1. region b:77-198 [125879] picpiclink
        9. 1zz6 picpicxrefxref
          1. region a:77-198 [125873] picpiclink
        10. 1zz6 picpicxrefxref
          automatically matched to 1ZZ6 A:77-198
          1. region b:77-198 [125875] picpiclink
        11. 1zz8 picpicxrefxrefxref
          automatically matched to 1ZZ6 A:77-198
          complexed with fe2, s0h
          1. region a:77-198 [125881] picpiclink
        12. 1zz8 picpicxrefxrefxref
          automatically matched to 1ZZ6 A:77-198
          complexed with fe2, s0h
          1. region b:77-198 [125883] picpiclink
        13. 1zz8 picpicxrefxrefxref
          automatically matched to 1ZZ6 A:77-198
          complexed with fe2, s0h
          1. region c:77-198 [125885] picpiclink
        14. 2bnn picpicxrefxref
          automatically matched to 1ZZ6 A:77-198
          complexed with fcn, zn
          1. region a:77-198 [128840] picpiclink
        15. 2bnn picpicxrefxref
          automatically matched to 1ZZ6 A:77-198
          complexed with fcn, zn
          1. region b:77-198 [128842] picpiclink
        16. 1zzb picpicxrefxref
          automatically matched to 1ZZ6 A:77-198
          complexed with co, s0h
          1. region a:77-198 [125893] picpiclink
        17. 1zzb picpicxrefxref
          automatically matched to 1ZZ6 A:77-198
          complexed with co, s0h
          1. region b:77-198 [125895] picpiclink
        18. 1zz9 picpicxrefxrefxref
          automatically matched to 1ZZ6 A:77-198
          complexed with fe2, so4
          1. region a:77-198 [125887] picpiclink
        19. 1zz9 picpicxrefxrefxref
          automatically matched to 1ZZ6 A:77-198
          complexed with fe2, so4
          1. region b:77-198 [125889] picpiclink
        20. 1zz9 picpicxrefxrefxref
          automatically matched to 1ZZ6 A:77-198
          complexed with fe2, so4
          1. region c:77-198 [125891] picpiclink
  6. Germin/Seed storage 7S protein [51187] (9)
    1. Germin [63853]
      Metal (manganese)-binding protein with oxalate oxidase and superoxide dismutase activities; homohexamer
      1. Barley (Hordeum vulgare) [TaxId: 4513] [63854] (5)
        1. 2et1 picpic
          automatically matched to d1fi2a_
          complexed with glv, mn
          1. region a:1-201 [132351] picpiclink
        2. 1fi2 picpic
          complexed with mn
          1. chain a [59845] picpiclink
        3. 2et7 picpic
          complexed with mn; mutant
          1. region a:1-201 [132352] picpiclink
        4. 2ete picpic
          complexed with glv, mn, nag
          1. region a:1-201 [132354] picpiclink
        5. 2ete picpic
          automatically matched to 2ETE A:1-201
          complexed with glv, mn, nag
          1. region b:1-201 [132355] picpiclink
    2. Auxin binding protein [75030]
      1. Maize (Zea mays) [TaxId: 4577] [75031] (2)
        1. 1lrh picpic
          complexed with man, nag, nla, zn; mutant
          1. chain a [74219] picpiclink
          2. chain b [74220] picpiclink
          3. chain c [74221] picpiclink
          4. chain d [74222] picpiclink
        2. 1lr5 picpic
          complexed with man, nag, zn; mutant
          1. chain a [74215] picpiclink
          2. chain b [74216] picpiclink
          3. chain c [74217] picpiclink
          4. chain d [74218] picpiclink
    3. Seed storage 7S protein [51188]
      duplication: consists of two germin-like domains spatially arranged as subunits in the RmlC dimer; trimer is similar to the germin hexamer
      1. French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885] [51189] (2)
        1. 2phl picpic
          complexed with nag, po4
          1. region a:11-210 [28082] picpiclink
          2. region a:220-381 [28083] picpiclink
          3. region b:11-210 [28084] picpiclink
          4. region b:220-381 [28085] picpiclink
          5. region c:10-210 [28086] picpiclink
          6. region c:220-381 [28087] picpiclink
        2. 1phs picpic
          CA-atoms only
          1. region a:11-212 [28088] picpiclink
          2. region a:220-381 [28089] picpiclink
      2. Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823] [51190] (8)
        1. 1dgw picpic
          1. chain a [28090] picpiclink
          2. chain x,y [28091] picpiclink
        2. 2cau picpic
          1. region a:46-223 [28092] picpiclink
          2. region a:246-421 [28093] picpiclink
        3. 1dgr picpic
          1. chain a [28096] picpiclink
          2. chain x,y [28097] picpiclink
          3. chain b [28098] picpiclink
          4. chain v,w [28099] picpiclink
          5. chain c [28100] picpiclink
          6. chain n,m [144355] picpiclink
        4. 2cav picpic
          1. region a:46-225 [28094] picpiclink
          2. region a:246-422 [28095] picpiclink
        5. 1cau picpic
          1. chain a [28102] picpiclink
          2. chain b [28103] picpiclink
        6. 1cax picpic
          1. chain a [28104] picpiclink
          2. chain b [28105] picpiclink
          3. chain c [28106] picpiclink
          4. chain d [28107] picpiclink
          5. chain e [28108] picpiclink
          6. chain f [28109] picpiclink
        7. 1cav picpic
          1. chain a [28110] picpiclink
          2. chain b [28111] picpiclink
        8. 1caw picpic
          1. chain a [28112] picpiclink
          2. chain b [28113] picpiclink
      3. Soybean (Glycine max), proglycinin [TaxId: 3847] [69345] (3)
        1. 1fxz picpic
          1. region a:10-248 [65059] picpiclink
          2. region a:297-470 [65060] picpiclink
          3. region b:10-248 [65061] picpiclink
          4. region b:297-470 [65062] picpiclink
          5. region c:10-248 [65063] picpiclink
          6. region c:297-470 [65064] picpiclink
        2. 1ucx picpic
          mutant
          1. region a:14-248 [99192] picpiclink
          2. region a:297-470 [99193] picpiclink
          3. region b:14-248 [99194] picpiclink
          4. region b:297-470 [99195] picpiclink
          5. region c:14-248 [99196] picpiclink
          6. region c:297-470 [99197] picpiclink
        3. 1ud1 picpic
          mutant
          1. region a:10-248 [99202] picpiclink
          2. region a:297-470 [99203] picpiclink
          3. region b:10-248 [99204] picpiclink
          4. region b:297-470 [99205] picpiclink
          5. region c:10-248 [99206] picpiclink
          6. region c:297-470 [99207] picpiclink
      4. Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847] [109608] (3)
        SQ P25974
        1. 1uij picpic
          mutant
          1. region a:6-175 [107866] picpiclink
          2. region a:183-392 [107867] picpiclink
          3. region b:6-175 [107868] picpiclink
          4. region b:183-392 [107869] picpiclink
          5. region c:6-175 [107870] picpiclink
          6. region c:183-392 [107871] picpiclink
          7. region d:6-175 [107872] picpiclink
          8. region d:183-392 [107873] picpiclink
          9. region e:6-175 [107874] picpiclink
          10. region e:183-392 [107875] picpiclink
          11. region f:6-175 [107876] picpiclink
          12. region f:183-392 [107877] picpiclink
        2. 1ipj picpic
          complexed with nag
          1. region a:9-176 [71258] picpiclink
          2. region a:183-393 [71259] picpiclink
          3. region b:9-175 [71260] picpiclink
          4. region b:186-393 [71261] picpiclink
          5. region c:9-177 [71262] picpiclink
          6. region c:181-393 [71263] picpiclink
        3. 1ipk picpic
          1. region a:8-174 [71264] picpiclink
          2. region a:183-392 [71265] picpiclink
          3. region b:9-174 [71266] picpiclink
          4. region b:183-392 [71267] picpiclink
          5. region c:3-180 [71268] picpiclink
          6. region c:181-392 [71269] picpiclink
      5. Soybean (Glycine max), glycinin A3B4 [TaxId: 3847] [89412] (1)
        1. 1od5 picpic
          complexed with co3, mg
          1. region a:7-251 [86832] picpiclink
          2. region a:321-493 [86833] picpiclink
          3. region b:7-251 [86834] picpiclink
          4. region b:321-493 [86835] picpiclink
      6. Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847] [110313] (1)
        SQ Q7XXT2 204-621
        1. 1uik picpic
          complexed with mg
          1. region a:148-350 [107878] picpiclink
          2. region a:351-535 [107879] picpiclink
          3. region b:148-350 [107880] picpiclink
          4. region b:351-535 [107881] picpiclink
          5. region c:148-350 [107882] picpiclink
          6. region c:351-535 [107883] picpiclink
    4. Oxalate decarboxylase OxdC (YvrK) [75033]
      duplication: consists of two germin-like metal-ion binding domains
      1. Bacillus subtilis [TaxId: 1423] [75034] (3)
        1. 1j58 picpic
          complexed with fmt, mg, mn, mse
          1. chain a [71531] picpiclink
        2. 1uw8 picpic
          complexed with mn, trs
          1. chain a [100100] picpiclink
        3. 1l3j picpic
          complexed with fmt, mg, mn
          1. chain a [73538] picpiclink
  7. YlbA-like [101979] (4)
    Pfam 05899; formerly pfam06038; duplication: consists of two germin-like domains
    1. Hypothetical protein YlbA [101980]
      1. Escherichia coli [TaxId: 562] [101981] (1)
        1. 1rc6 picpic
          structural genomics
          1. chain a [97287] picpiclink
          2. chain b [97288] picpiclink
    2. Glyoxylate-induced protein PA1140 [101982]
      1. Pseudomonas aeruginosa [TaxId: 287] [101983] (1)
        1. 1sq4 picpic
          structural genomics; NESG target PAR14
          complexed with scn
          1. chain a [98962] picpiclink
          2. chain b [98963] picpiclink
    3. Hypothetical protein EF2996 [110314]
      1. Enterococcus faecalis [TaxId: 1351] [110315] (1)
        SQ Q82ZQ3
        1. 1sef picpic
          Structural genomics target
          1. chain a [105452] picpiclink
    4. Hypothetical protein DR1152 [110316]
      1. Deinococcus radiodurans [TaxId: 1299] [110317] (1)
        SQ Q9RV77
        1. 1sfn picpic
          Structural genomics target
          1. chain a [105496] picpiclink
          2. chain b [105497] picpiclink
  8. Pirin-like [101984] (2)
    Share a common two-domain fold with the 7S protein; there is a metal-binding site in the N-terminal domain similar to the metal-binding site of germin
    1. Pirin [101985]
      Bcl-3 and nuclear factor I-interacting protein
      1. Human (Homo sapiens) [TaxId: 9606] [101986] (1)
        1. 1j1l picpic
          complexed with fe2
          1. chain a [90766] picpiclink
    2. Hypothetical protein YhhW [141595]
      1. Escherichia coli [TaxId: 562] [141596] (1)
        SQ P46852 1-231
        1. 1tq5 picpic
          complexed with cd
          1. region a:1-231 [119311] picpiclink
  9. Quercetin 2,3-dioxygenase-like [75035] (2)
    Share a common two-domain fold with the 7S protein; there is a metal-binding site in the N-terminal domain similar to the metal-binding site of germin
    1. Quercetin 2,3-dioxygenase [75036]
      1. Aspergillus japonicus [TaxId: 34381] [75037] (5)
        1. 1juh picpic
          complexed with cu, edo, man, nag
          1. chain a [71884] picpiclink
          2. chain b [71885] picpiclink
          3. chain c [71886] picpiclink
          4. chain d [71887] picpiclink
        2. 1gqg picpic
          complexed with cu, dcd, man, nag
          1. chain a [70352] picpiclink
          2. chain b [70353] picpiclink
          3. chain c [70354] picpiclink
          4. chain d [70355] picpiclink
        3. 1h1i picpic
          complexed with cu, mpd, nag, que
          1. chain a [76469] picpiclink
          2. chain b [76470] picpiclink
          3. chain c [76471] picpiclink
          4. chain d [76472] picpiclink
        4. 1h1m picpic
          complexed with bma, cu, kmp, man, mpd, nag
          1. chain a [76473] picpiclink
          2. chain b [76474] picpiclink
          3. chain c [76475] picpiclink
          4. chain d [76476] picpiclink
        5. 1gqh picpic
          complexed with cu, koj, man, nag
          1. chain a [70356] picpiclink
          2. chain b [70357] picpiclink
          3. chain c [70358] picpiclink
          4. chain d [70359] picpiclink
    2. Hypothetical protein YxaG [141597]
      1. Bacillus subtilis [TaxId: 1423] [141598] (2)
        SQ P42106 5-334
        1. 1y3t picpic
          complexed with fe
          1. region a:5-334 [122600] picpiclink
        2. 1y3t picpic
          automatically matched to 1Y3T A:5-334
          complexed with fe
          1. region b:5-334 [122601] picpiclink
  10. Type I phosphomannose isomerase [51191] (3)
    Share a common two-domain fold with the 7S protein; there is a metal-binding site in the N-terminal domain similar to the metal-binding site of germin
    1. Phosphomannose isomerase [51192]
      1. Yeast (Candida albicans) [TaxId: 5476] [51193] (1)
        contains insert all-alpha subdomain; residues 152-266
        1. 1pmi picpic
          complexed with zn
          1. chain a [28114] picpiclink
    2. Mannose-6-phosphate isomerase ManA [101987]
      1. Bacillus subtilis [TaxId: 1423] [101988] (1)
        1. 1qwr picpic
          complexed with act, fmt, so4, zn
          1. chain a [96491] picpiclink
          2. chain b [96492] picpiclink
    3. Putative mannosephosphate isomerase AF0035 [141599]
      1. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [141600] (1)
        SQ O30200 1-299
        1. 1zx5 picpic
          complexed with acy, edo, gol, lfr
          1. region a:1-299 [125763] picpiclink
  11. Homogentisate dioxygenase [51194] (1)
    Share a common two-domain fold with the 7S protein; there is a metal-binding site in the C-terminal domain similar to the metal-binding site of germin
    1. Homogentisate dioxygenase [51195]
      1. Human (Homo sapiens) [TaxId: 9606] [51196] (2)
        1. 1eyb picpic
          1. chain a [28115] picpiclink
        2. 1ey2 picpic
          complexed with fe2
          1. chain a [28116] picpiclink
  12. Acireductone dioxygenase [82191] (2)
    1. Acireductone dioxygenase [82192]
      1. Klebsiella pneumoniae [TaxId: 573] [82193] (1)
        NMR-derived model
        1. 1zrr picpic
          automatically matched to d1m4oa_
          complexed with ni
          1. region a:1-179 [125555] picpiclink
      2. Mouse (Mus musculus) [TaxId: 10090] [141601] (1)
        SQ Q99JT9 1-179
        1. 1vr3 picpic
          complexed with ipa, ni, unl
          1. region a:1-179 [120431] picpiclink
  13. KduI-like [110318] (2)
    Pfam 04962: duplication: consists of two germin-like domains
    1. 5-keto-4-deoxyuronate isomerase KduI [110319]
      1. Escherichia coli [TaxId: 562] [110320] (3)
        SQ Q46938 1-266
        1. 1xru picpic
          complexed with 1pe, zn
          1. region a:1-277 [122262] picpiclink
        2. 1xru picpic
          automatically matched to 1XRU A:1-277
          complexed with 1pe, zn
          1. region b:1-277 [122263] picpiclink
        3. 1x8m picpic
          1. chain a [109516] picpiclink
          2. chain b [109517] picpiclink
          3. chain c [109518] picpiclink
          4. chain d [109519] picpiclink
          5. chain e [109520] picpiclink
          6. chain f [109521] picpiclink
      2. Enterococcus faecalis [TaxId: 1351] [141602] (6)
        SQ Q838L9 1-260
        1. 1ywk picpic
          1. region a:1001-1260 [124155] picpiclink
        2. 1ywk picpic
          automatically matched to 1YWK A:1001-1260
          1. region b:1001-1260 [124156] picpiclink
        3. 1ywk picpic
          automatically matched to 1YWK A:1001-1260
          1. region c:1001-1259 [124157] picpiclink
        4. 1ywk picpic
          automatically matched to 1YWK A:1001-1260
          1. region d:1001-1260 [124158] picpiclink
        5. 1ywk picpic
          automatically matched to 1YWK A:1001-1260
          1. region e:1001-1260 [124159] picpiclink
        6. 1ywk picpic
          automatically matched to 1YWK A:1001-1260
          1. region f:1001-1260 [124160] picpiclink
  14. Ureidoglycolate hydrolase AllA [117312] (3)
    Pfam 04115; beta-hairpin-swapped dimeric protein of the germin-like fold
    1. Ureidoglycolate hydrolase AllA [117313]
      1. Shigella flexneri [TaxId: 623] [117314] (2)
        SQ P77731 ! SQ P63487
        1. 1xsq picpic
          1. chain a [115999] picpiclink
          2. chain b [116000] picpiclink
        2. 1xsr picpic
          1. chain a [116001] picpiclink
          2. chain b [116002] picpiclink
      2. Pseudomonas putida [TaxId: 303] [141603] (2)
        SQ P59285 1-166
        1. 2bdr picpic
          complexed with na
          1. region a:1-166 [128342] picpiclink
        2. 2bdr picpic
          automatically matched to 2BDR A:1-166
          complexed with na
          1. region b:1-166 [128343] picpiclink
      3. Escherichia coli [TaxId: 562] [141604] (2)
        SQ P63486 1-160
        1. 1yqc picpic
          complexed with glv
          1. region a:1-160 [123877] picpiclink
        2. 1yqc picpic
          automatically matched to 1YQC A:1-160
          complexed with glv
          1. region b:1-160 [123878] picpiclink
  15. Probable transcriptional regulator VC1968, C-terminal domain [117315] (1)
    1. Probable transcriptional regulator VC1968, C-terminal domain [117316]
      1. Vibrio cholerae [TaxId: 666] [117317] (1)
        SQ Q9KQN0
        1. 1y9q picpicxref
          Structural genomics target
          complexed with med, zn
          1. region a:83-181 [116593] picpiclink
  16. YML079-like [117318] (3)
    Pfam 06172; DUF985
    1. Hypothetical protein YML079W [117319]
      1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [117320] (2)
        SQ Q03629
        1. 1xe7 picpic
          structural genomics target
          complexed with acy, edo, gun
          1. chain a [115213] picpiclink
          2. chain b [115214] picpiclink
          3. chain c [115215] picpiclink
        2. 1xe8 picpic
          Structural genomics target
          complexed with ade, cit, gol
          1. chain a [115216] picpiclink
          2. chain b [115217] picpiclink
          3. chain c [115218] picpiclink
    2. Hypothetical protein Atu3615 [141605]
      1. Agrobacterium tumefaciens [TaxId: 358] [141606] (7)
        SQ Q8U9W0 4-143
        1. 1znp picpic
          1. region a:4-143 [125394] picpiclink
        2. 1znp picpic
          automatically matched to 1ZNP A:4-143
          1. region b:5-143 [125395] picpiclink
        3. 1znp picpic
          automatically matched to 1ZNP A:4-143
          1. region c:5-142 [125396] picpiclink
        4. 1znp picpic
          automatically matched to 1ZNP A:4-143
          1. region d:5-142 [125397] picpiclink
        5. 1znp picpic
          automatically matched to 1ZNP A:4-143
          1. region e:5-143 [125398] picpiclink
        6. 1znp picpic
          automatically matched to 1ZNP A:4-143
          1. region f:5-143 [125399] picpiclink
        7. 1znp picpic
          automatically matched to 1ZNP A:4-143
          1. region g:5-143 [125400] picpiclink
    3. Hypothetical protein SO0799 [141607]
      1. Shewanella oneidensis [TaxId: 70863] [141608] (10)
        SQ Q8EIN8 1-158
        1. 1yud picpic
          1. region a:1-158 [124046] picpiclink
        2. 1yud picpic
          automatically matched to 1YUD A:1-158
          1. region b:1-158 [124047] picpiclink
        3. 1yud picpic
          automatically matched to 1YUD A:1-158
          1. region c:1-158 [124048] picpiclink
        4. 1yud picpic
          automatically matched to 1YUD A:1-158
          1. region d:1-158 [124049] picpiclink
        5. 1yud picpic
          automatically matched to 1YUD A:1-158
          1. region e:1-158 [124050] picpiclink
        6. 1yud picpic
          automatically matched to 1YUD A:1-158
          1. region f:1-158 [124051] picpiclink
        7. 1yud picpic
          automatically matched to 1YUD A:1-158
          1. region g:1-158 [124052] picpiclink
        8. 1yud picpic
          automatically matched to 1YUD A:1-158
          1. region h:1-158 [124053] picpiclink
        9. 1yud picpic
          automatically matched to 1YUD A:1-158
          1. region i:1-158 [124054] picpiclink
        10. 1yud picpic
          automatically matched to 1YUD A:1-158
          1. region j:1-158 [124055] picpiclink
  17. PA5104-like [141609] (1)
    Pfam 05962; DUF886; duplication: consists of two germin-like domains; overall structural similarity to the YlbA-like family (scop_fa 101979) except a deletion in the interdomain linker region
    1. Hypothetical protein PA5104 [141610]
      1. Pseudomonas aeruginosa [TaxId: 287] [141611] (4)
        SQ Q9HU79 2-196
        1. 1yll picpic
          1. region a:2-196 [123653] picpiclink
        2. 1yll picpic
          automatically matched to 1YLL A:2-196
          1. region b:3-196 [123654] picpiclink
        3. 1yll picpic
          automatically matched to 1YLL A:2-196
          1. region c:2-195 [123655] picpiclink
        4. 1yll picpic
          automatically matched to 1YLL A:2-196
          1. region d:3-196 [123656] picpiclink
  18. MJ0764-like [141612] (1)
    1. Hypothetical protein MJ0764 [141613]
      1. Archaeon Methanococcus jannaschii [TaxId: 2190] [141614] (1)
        SQ Q58174 1-108
        1. 2b8m picpic
          complexed with cl, edo, so4
          1. region a:1-108 [128092] picpiclink
  19. Cysteine dioxygenase type I [141615] (4)
    Pfam 05995, CDO_I
    1. Cysteine dioxygenase type I [141616]
      1. Mouse (Mus musculus) [TaxId: 10090] [141617] (4)
        SQ P60334 5-190
        1. 2b5h picpic
          automatically matched to 2ATF A:5-190
          complexed with fe
          1. region a:5-190 [127894] picpiclink
        2. 2gh2 picpic
          automatically matched to 2ATF A:5-190
          complexed with fe, so4
          1. region a:5-190 [135172] picpiclink
        3. 2atf picpic
          complexed with edo, ni
          1. region a:5-190 [127290] picpiclink
        4. 2q4s picpic
          automatically matched to 2ATF A:5-190
          complexed with edo, ni
          1. region a:5-190 [139877] picpiclink
      2. Ralstonia eutropha [TaxId: 106590] [159289] (1)
        SQ Q46R41 11-202
        1. 2gm6 picpic
          complexed with edo, fe, so4
          1. region a:11-202 [147130] picpiclink
      3. Human (Homo sapiens) [TaxId: 9606] [159290] (1)
        SQ Q16878 6-190
        1. 2ic1 picpic
          complexed with cys, fe2
          1. region a:6-190 [147600] picpiclink
      4. Rattus norvegicus [TaxId: 10116] [159291] (1)
        1. 3eln picpic
          automatically matched to d2atfa1
          complexed with 2co, fe2
          1. region a:5-190 [158185] picpiclink
  20. 3-hydroxyanthranilic acid dioxygenase-like [141618] (2)
    Pfam 06052; 3-HAO
    1. 3-hydroxyanthranilate-3,4-dioxygenase [141619]
      1. Ralstonia metallidurans [TaxId: 119219] [141620] (4)
        SQ Q1LCS4 1-174
        1. 1yfu picpic
          complexed with cl, fe, trs
          1. region a:1-174 [123094] picpiclink
        2. 1yfw picpic
          automatically matched to 1YFU A:1-174
          complexed with 4aa, fe, oxy, trs
          1. region a:1-174 [123095] picpiclink
        3. 1yfx picpic
          automatically matched to 1YFU A:1-174
          complexed with 4aa, fe, no, trs
          1. region a:1-174 [123096] picpiclink
        4. 1yfy picpic
          automatically matched to 1YFU A:1-174
          complexed with 3ha, fe, trs
          1. region a:1-174 [123097] picpiclink
      2. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [159292] (2)
        SQ P47096 1-175
        1. 1zvf picpic
          complexed with ni
          1. region a:1-175 [146029] picpiclink
        2. 1zvf picpic
          automatically matched to 1ZVF A:1-175
          complexed with ni
          1. region b:1-171 [146030] picpiclink
  21. Acetylacetone-cleaving enzyme-like [159293] (1)
    PfamB 026844
    1. Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe_A3659 [159294]
      1. Rubrivivax gelatinosus [TaxId: 28068] [159295] (2)
        SQ A2SM23 1-144
        1. 2o1q picpic
          complexed with act, cl, pg4, zn
          1. region a:1-144 [148547] picpiclink
        2. 2o1q picpic
          automatically matched to 2O1Q A:1-144
          complexed with act, cl, pg4, zn
          1. region b:1-144 [148548] picpiclink
  22. VPA0057-like [159296] (1)
    Pfam 06865; DUF1255; non-canonical dimerisation mode
    1. Uncharacterized protein VPA0057 [159297]
      1. Vibrio parahaemolyticus [TaxId: 670] [159298] (1)
        SQ Q87K41 2-94
        1. 2oyz picpic
          1. region a:2-94 [149082] picpiclink
  23. Gentisate 1,2-dioxygenase-like [159299] (3)
    Share a common two-domain fold with the 7S protein; there is a metal-binding site in the N-terminal domain similar to the metal-binding site of germin; homotetramer
    1. Gentisate 1,2-dioxygenase [159300]
      Salicylate 1,2-dioxygenase
      1. Escherichia coli [TaxId: 562] [159301] (4)
        SQ Q8X655 35-342
        1. 2d40 picpic
          complexed with fe
          1. region a:35-342 [146454] picpiclink
        2. 2d40 picpic
          automatically matched to 2D40 A:35-342
          complexed with fe
          1. region b:36-341 [146455] picpiclink
        3. 2d40 picpic
          automatically matched to 2D40 A:35-342
          complexed with fe
          1. region c:35-342 [146456] picpiclink
        4. 2d40 picpic
          automatically matched to 2D40 A:35-342
          complexed with fe
          1. region d:35-342 [146457] picpiclink
      2. Silicibacter pomeroyi [TaxId: 89184] [159302] (2)
        SQ Q5LLB1 19-373
        1. 3bu7 picpic
          complexed with fe2
          1. region a:19-373 [155593] picpiclink
        2. 3bu7 picpic
          automatically matched to 3BU7 A:19-373
          complexed with fe2
          1. region b:19-373 [155594] picpiclink
      3. Pseudaminobacter salicylatoxidans [TaxId: 93369] [159303] (4)
        SQ Q67FT0 17-367
        1. 2phd picpic
          complexed with act, cl, fe
          1. region a:17-367 [149468] picpiclink
        2. 2phd picpic
          automatically matched to 2PHD A:17-367
          complexed with act, cl, fe
          1. region b:17-367 [149469] picpiclink
        3. 2phd picpic
          automatically matched to 2PHD A:17-367
          complexed with act, cl, fe
          1. region c:17-367 [149470] picpiclink
        4. 2phd picpic
          automatically matched to 2PHD A:17-367
          complexed with act, cl, fe
          1. region d:17-366 [149471] picpiclink
  24. EutQ-like [159304] (1)
    Pfam 06249
    1. Ethanolamine utilization protein EutQ [159305]
      1. Salmonella typhimurium [TaxId: 90371] [159306] (2)
        SQ Q9ZFV5 100-227
        1. 2pyt picpic
          1. region a:100-227 [149957] picpiclink
        2. 2pyt picpic
          automatically matched to 2PYT A:100-227
          1. region b:103-225 [149958] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk