Structural Classification of Proteins
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Family: Germin/Seed storage 7S protein

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Double-stranded beta-helix [51181]
    one turn of helix is made by two pairs of antiparallel strands linked with short turns
    has appearance of a sandwich of distinct architecture and jelly-roll topology
  4. Superfamily: RmlC-like cupins [51182]
    link to SUPERFAMILY database - Superfamily
  5. Family: Germin/Seed storage 7S protein [51187]

Protein Domains:

  1. Germin [63853]
    Metal (manganese)-binding protein with oxalate oxidase and superoxide dismutase activities; homohexamer
    1. Barley (Hordeum vulgare) [TaxId: 4513] [63854] (5) picpic
  2. Auxin binding protein [75030]
    1. Maize (Zea mays) [TaxId: 4577] [75031] (2) picpic
  3. Seed storage 7S protein [51188]
    duplication: consists of two germin-like domains spatially arranged as subunits in the RmlC dimer; trimer is similar to the germin hexamer
    1. French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885] [51189] (2) picpic
    2. Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823] [51190] (8) picpic
    3. Soybean (Glycine max), proglycinin [TaxId: 3847] [69345] (3) picpic
    4. Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847] [109608] (3) picpic
      SQ P25974
    5. Soybean (Glycine max), glycinin A3B4 [TaxId: 3847] [89412] (1) picpic
    6. Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847] [110313] (1) picpic
      SQ Q7XXT2 204-621
  4. Oxalate decarboxylase OxdC (YvrK) [75033]
    duplication: consists of two germin-like metal-ion binding domains
    1. Bacillus subtilis [TaxId: 1423] [75034] (3) picpic
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk