Structural Classification of Proteins
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Family: 5' to 3' exonuclease, C-terminal subdomain

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: SAM domain-like [47768]
    4-5 helices; bundle of two orthogonally packed alpha-hairpins; involved in the interactions with DNA and proteins
  4. Superfamily: 5' to 3' exonuclease, C-terminal subdomain [47807]
    link to SUPERFAMILY database - Superfamily
  5. Family: 5' to 3' exonuclease, C-terminal subdomain [47808]

Protein Domains:

  1. T4 RNase H [47809]
    1. Bacteriophage T4 [TaxId: 10665] [47810] (2) picpic
  2. 5' to 3' exonuclease domain of DNA polymerase Taq [47811]
    1. Thermus aquaticus [TaxId: 271] [47812] (4) picpic
  3. T5 5'-exonuclease [47813]
    1. Bacteriophage T5 [TaxId: 10726] [47814] (4) picpic
  4. Flap endonuclease-1 (Fen-1 nuclease) [47815]
    1. Archaeon Methanococcus jannaschii [TaxId: 2190] [47816] (2) picpic
    2. Archaeon Pyrococcus horikoshii [TaxId: 53953] [81798] (1) picpic
    3. Archaeon Pyrococcus furiosus [TaxId: 2261] [47818] (1) picpic
    4. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [101255] (2) picpic
    5. Human (Homo sapiens) [TaxId: 9606] [140638] (3) picpic
      SQ P39748 218-357
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk