Fold: SAM domain-like

4-5 helices; bundle of two orthogonally packed alpha-hairpins; involved in the interactions with DNA and proteins

Lineage:

1. Root: scop
2. Class: All alpha proteins [46456]
3. Fold: SAM domain-like [47768]
   4-5 helices; bundle of two orthogonally packed alpha-hairpins; involved in the interactions with DNA and proteins

Superfamilies:

1. SAM/Pointed domain [47769] (3)
   uperfamily
2. RuvA domain 2-like [47781] (7)
   duplication: contains two helix-hairpin-helix (HhH) motifs
   uperfamily
3. C-terminal domain of RNA polymerase alpha subunit [47789] (1)
   contains one classic and one pseudo HhH motifs
   uperfamily
4. Rad51 N-terminal domain-like [47794] (3)
   contains one classic and one pseudo HhH motifs
   uperfamily
5. Barrier-to-autointegration factor, BAF [47798] (1)
   contains one classic and one pseudo HhH motifs
   uperfamily
6. DNA polymerase beta, N-terminal domain-like [47802] (1)
   contains one classic and one pseudo HhH motifs
   uperfamily
7. PsbU/PolX domain-like [81585] (2)
   contains one classic and one pseudo HhH motifs
   uperfamily
8. 5' to 3' exonuclease, C-terminal subdomain [47807] (1)
   uperfamily
9. HRDC-like [47819] (4)
   uperfamily
10. lambda integrase-like, N-terminal domain [47823] (1)
    uperfamily
11. Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain [47831] (1)
    uperfamily
12. Hypothetical protein YjbJ [69047] (1)
    uperfamily
13. Putative methyltransferase TM0872, insert domain [81799] (1)
    uperfamily
14. eIF2alpha middle domain-like [116742] (1)
    uperfamily
15. YozE-like [140652] (1)
    uperfamily
16. GspK insert domain-like [158544] (1)
    tandem repeat of two SAM-like domains iserted into pilin fold; domain 1 contains one classic HhH motif

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk