Structural Classification of Proteins
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Family: Myb/SANT domain

Lineage:

  1. Root: scop
  2. Class: All alpha proteins [46456]
  3. Fold: DNA/RNA-binding 3-helical bundle [46688]
    core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down
  4. Superfamily: Homeodomain-like [46689]
    consists only of helices
    link to SUPERFAMILY database - Superfamily
  5. Family: Myb/SANT domain [46739]

Protein Domains:

  1. c-Myb, DNA-binding domain [46740]
    duplication
    1. Mouse (Mus musculus) [TaxId: 10090] [46742] (16)
      1. 1gvd picpic
        repeat 2
        complexed with nh4, so4; mutant
        1. chain a [83338] picpiclink
      2. 1gv5 picpic
        repeat 2
        complexed with na
        1. chain a [83337] picpiclink
      3. 1gv2 picpic
        repeats 2 & 3
        complexed with na
        1. region a:89-143 [83335] picpiclink
        2. region a:144-190 [83336] picpiclink
      4. 1guu picpic
        repeat 1
        complexed with na
        1. chain a [83332] picpiclink
      5. 1h88 picpicxref
        complexed with nh4; mutant
        1. region c:39-88 [65721] picpiclink
        2. region c:89-143 [65722] picpiclink
        3. region c:144-190 [65723] picpiclink
      6. 1mbj picpic
        repeat 3
        complexed with nh2
        1. chain a [16035] picpiclink
      7. 1mbk picpic
        repeat 3
        complexed with nh2
        1. chain a [16031] picpiclink
      8. 1mbh picpic
        repeat 2
        complexed with nh2
        1. chain a [16036] picpiclink
      9. 1mbf picpic
        repeat 1
        complexed with nh2
        1. chain a [16037] picpiclink
      10. 1mbe picpic
        repeat 1
        complexed with nh2
        1. chain a [16038] picpiclink
      11. 1mbg picpic
        repeat 2
        complexed with nh2
        1. chain a [16033] picpiclink
      12. 1idz picpic
        repeat 3
        mutant
        1. chain a [16032] picpiclink
      13. 1idy picpic
        repeat 3
        mutant
        1. chain a [16034] picpiclink
      14. 1msf picpic
        repeats 2 & 3
        protein/DNA complex
        1. region c:89-143 [16041] picpiclink
        2. region c:144-193 [16042] picpiclink
      15. 1mse picpic
        repeats 2 & 3
        protein/DNA complex
        1. region c:89-143 [16039] picpiclink
        2. region c:144-193 [16040] picpiclink
      16. 1h89 picpicxref
        repeat 1 is partly disordered
        complexed with k; mutant
        1. region c:77-88 [65726] picpiclink
        2. region c:89-143 [65727] picpiclink
        3. region c:144-191 [65728] picpiclink
  2. b-Myb DNA binding domain [46743]
    1. Chicken (Gallus gallus) [TaxId: 9031] [46744] (1)
      1. 1a5j picpic
        repeats 2 & 3
        1. region a:1-55 [16043] picpiclink
        2. region a:56-110 [16044] picpiclink
  3. v-Myb [68960]
    1. Avian myeloblastosis virus [TaxId: 11866] [68961] (1)
      1. 1h8a picpicxref
        repeats 2 & 3
        1. region c:87-143 [65731] picpiclink
        2. region c:144-191 [65732] picpiclink
  4. Rap1 [63467]
    1. Human (Homo sapiens) [TaxId: 9606] [63468] (1)
      1. 1fex picpic
        mutant
        1. chain a [59803] picpiclink
  5. SANT domain of the nucleosome remodeling ATPase ISWI [100996]
    1. Fruit fly (Drosophila melanogaster) [TaxId: 7227] [100997] (1)
      1. 1ofc picpicxrefxref
        complexed with g4d, glc, gol
        1. region x:799-850 [92826] picpiclink
  6. 2610100b20rik gene product [109649]
    1. Mouse (Mus musculus) [TaxId: 10090] [109650] (1)
      SQ Q80TB4 1951-2032
      1. 1ug2 picpic
        Structural genomics target
        1. chain a [107823] picpiclink
  7. Hypothetical protein C14orf106 (KIAA1903) [116782]
    1. Human (Homo sapiens) [TaxId: 9606] [116783] (1)
      SQ Q6P0N0 877-936
      1. 1wgx picpic
        Structural genomics target
        1. chain a [114626] picpiclink
  8. Metastasis associated protein MTA3 [140163]
    1. Mouse (Mus musculus) [TaxId: 10090] [140164] (1)
      SQ Q924K8 267-323
      1. 2crg picpic
        1. region a:8-64 [130739] picpiclink
  9. REST corepressor 1, CoREST [140165]
    1. Human (Homo sapiens) [TaxId: 9606] [140166] (2)
      SQ Q9UKL0 376-440
      1. 2iw5 picpicxrefxrefxref
        2nd SANT domain; in the PDB chain, also there is a coil coiled region N-terminally to this domain
        complexed with cl, fad, gol, nh4
        1. region b:376-440 [137739] picpiclink
      2. 2uxn picpicxrefxrefxref
        automatically matched to 2IW5 B:376-440
        complexed with cl, fda, gol, lyp
        1. region b:376-440 [140024] picpiclink
  10. Radialis [140167]
    stand-alone Myb/SANT domain
    1. Garden snapdragon (Antirrhinum majus) [TaxId: 4151] [140168] (1)
      SQ Q58FS3 8-70
      1. 2cjj picpic
        1. region a:8-70 [130540] picpiclink
  11. DnaJ homolog subfamily C member 1 [140169]
    1. Human (Homo sapiens) [TaxId: 9606] [140170] (2)
      SQ Q96KC8 327-385! SQ Q96KC8 484-543
      1. 2cqq picpic
        1st Myb domain
        1. region a:8-66 [130728] picpiclink
      2. 2cqr picpic
        2nd Myb domain
        1. region a:7-66 [130729] picpiclink
  12. Nuclear receptor corepressor 2 [140171]
    1. Human (Homo sapiens) [TaxId: 9606] [140172] (1)
      SQ Q9Y618 413-480
      1. 1xc5 picpic
        1. region a:413-480 [121850] picpiclink
  13. MYSM1 (KIAA1915) [140173]
    1. Human (Homo sapiens) [TaxId: 9606] [140174] (1)
      SQ Q5VVJ2 117-181
      1. 2cu7 picpic
        1. region a:8-72 [130805] picpiclink
  14. Telomere binding protein TBP1 [158244]
    1. Tobacco (Nicotiana tabacum) [TaxId: 4097] [158245] (3)
      SQ Q84ZU4 578-660
      1. 2ckx picpic
        1. region a:578-660 [146411] picpiclink
      2. 2qhb picpic
        automatically matched to 2CKX A:578-660
        1. region a:578-659 [150786] picpiclink
      3. 2qhb picpic
        automatically matched to 2CKX A:578-660
        1. region b:578-659 [150787] picpiclink
  15. Telomere repeat-binding protein [158246]
    1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [158247] (1)
      SQ Q9LTI6 464-560
      1. 2aje picpic
        1. region a:9-105 [146056] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk