Structural Classification of Proteins
home mail help root up expand collapse

Family: Cytochrome c oxidase subunit II-like, transmembrane region

Lineage:

  1. Root: scop
  2. Class: Membrane and cell surface proteins and peptides [56835]
    Does not include proteins in the immune system
  3. Fold: Transmembrane helix hairpin [81334]
    two antiparallel transmembrane helices
  4. Superfamily: Cytochrome c oxidase subunit II-like, transmembrane region [81464]
    link to SUPERFAMILY database - Superfamily
  5. Family: Cytochrome c oxidase subunit II-like, transmembrane region [81463]

Protein Domains:

  1. Mitochondrial cytochrome c oxidase, subunit II [81455]
    1. Cow (Bos taurus) [TaxId: 9913] [81454] (21)
      1. 1v54 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, unx, zn
        1. region b:1-90 [100323] picpiclink
        2. region o:1-90 [100337] picpiclink
      2. 2dyr picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1occb2
        complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, unx, zn
        1. region b:1-90 [131901] picpiclink
      3. 2dyr picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1occb2
        complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, unx, zn
        1. region o:1-90 [131915] picpiclink
      4. 1v55 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, unx, zn
        1. region b:1-90 [100351] picpiclink
        2. region o:1-90 [100365] picpiclink
      5. 2eij picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1occb2
        complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, zn
        1. region b:1-90 [132141] picpiclink
      6. 2eij picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1occb2
        complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, zn
        1. region o:1-90 [132155] picpiclink
      7. 2eil picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1occb2
        complexed with cd, cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, zn
        1. region b:1-90 [132197] picpiclink
      8. 2eil picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1occb2
        complexed with cd, cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, zn
        1. region o:1-90 [132211] picpiclink
      9. 2eik picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1occb2
        complexed with cd, cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, zn
        1. region b:1-90 [132169] picpiclink
      10. 2eik picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1occb2
        complexed with cd, cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, zn
        1. region o:1-90 [132183] picpiclink
      11. 2dys picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1occb2
        complexed with cdl, chd, cu, cua, dmu, glh, hea, mg, na, pek, pgv, psc, tgl, unx, zn
        1. region b:1-90 [131929] picpiclink
      12. 2dys picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1occb2
        complexed with cdl, chd, cu, cua, dmu, glh, hea, mg, na, pek, pgv, psc, tgl, unx, zn
        1. region o:1-90 [131943] picpiclink
      13. 2occ picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with cu, hea, mg, na, per, zn
        1. region b:1-90 [43519] picpiclink
        2. region o:1-90 [43529] picpiclink
      14. 1ocr picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with cu, hea, mg, na, zn
        1. region b:1-90 [43539] picpiclink
        2. region o:1-90 [43549] picpiclink
      15. 2eim picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1occb2
        complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, zn
        1. region b:1-90 [132225] picpiclink
      16. 2eim picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1occb2
        complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, zn
        1. region o:1-90 [132239] picpiclink
      17. 2ein picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1occb2
        complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, zn
        1. region b:1-90 [132253] picpiclink
      18. 2ein picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1occb2
        complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, zn
        1. region o:1-90 [132267] picpiclink
      19. 1occ picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with cu, hea, mg, zn
        1. region b:1-90 [43559] picpiclink
        2. region o:1-90 [43569] picpiclink
      20. 1ocz picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with azi, cu, hea, mg, na, zn
        1. region b:1-90 [43579] picpiclink
        2. region o:1-90 [43589] picpiclink
      21. 1oco picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with cmo, cu, hea, mg, na, zn
        1. region b:1-90 [43599] picpiclink
        2. region o:1-90 [43609] picpiclink
  2. Bacterial aa3 type cytochrome c oxidase subunit II [81458]
    1. Paracoccus denitrificans [TaxId: 266] [81456] (3)
      1. 3ehb picpicxrefxrefxref
        automatically matched to d1ar1b2
        complexed with ca, cu, hea, lda, lmt, mg, per; mutant
        1. region b:1-107 [158151] picpiclink
      2. 1ar1 picpicxrefxrefxrefxref
        complexed with ca, cu, hea, lda, mg
        1. region b:1-107 [43619] picpiclink
      3. 1qle picpicxrefxrefxrefxrefxrefxref
        1. region b:1-107 [43621] picpiclink
    2. Rhodobacter sphaeroides [TaxId: 1063] [81457] (6)
      1. 3dtu picpicxrefxrefxrefxref
        automatically matched to d1m56b2
        complexed with ca, cd, cu, dmu, dxc, hea, hto, mg, oh, po4, trd
        1. region b:30-129 [157858] picpiclink
      2. 3dtu picpicxrefxrefxrefxref
        automatically matched to d1m56b2
        complexed with ca, cd, cu, dmu, dxc, hea, hto, mg, oh, po4, trd
        1. region d:30-129 [157861] picpiclink
      3. 2gsm picpicxrefxrefxrefxref
        automatically matched to d1m56b2
        complexed with ca, cd, cu, dmu, hea, mg, oh, trd
        1. region b:30-129 [135591] picpiclink
      4. 2gsm picpicxrefxrefxrefxref
        automatically matched to d1m56b2
        complexed with ca, cd, cu, dmu, hea, mg, oh, trd
        1. region d:30-129 [135594] picpiclink
      5. 1m56 picpicxrefxrefxrefxref
        complexed with ca, cu, hea, mg, peh
        1. region b:30-129 [74473] picpiclink
        2. region h:30-129 [74478] picpiclink
      6. 1m57 picpicxrefxrefxrefxref
        complexed with ca, cu, hea, mg, peh; mutant
        1. region b:30-129 [74483] picpiclink
        2. region h:30-129 [74488] picpiclink
  3. Bacterial ba3 type cytochrome c oxidase subunit II [81460]
    1. Thermus thermophilus [TaxId: 274] [81459] (5)
      the "missing" first helix is complemented by the ba3 subunit IIa
      1. 1xme picpicxrefxrefxref
        automatically matched to d1ehkb2
        complexed with bng, cu, cua, gol, has, hem
        1. region b:3-36 [122145] picpiclink
      2. 1ehk picpicxrefxrefxref
        complexed with 1cu, bng, cua, has, hem
        1. region b:3-40 [43625] picpiclink
      3. 2qpe picpicxrefxref
        automatically matched to d1ehkb2
        complexed with cu1, cua, has, hem; mutant
        1. region b:3-36 [151203] picpiclink
      4. 3bvd picpicxrefxref
        automatically matched to d1ehkb2
        complexed with cu, cua, has, hem, xe; mutant
        1. region b:3-36 [155661] picpiclink
      5. 2qpd picpicxrefxref
        automatically matched to d1ehkb2
        complexed with cu1, cua, has, hem; mutant
        1. region b:3-36 [151200] picpiclink
  4. Cytochrome O ubiquinol oxidase, subunit II [81462]
    1. Escherichia coli [TaxId: 562] [81461] (1)
      1. 1fft picpicxrefxrefxref
        complexed with cu, hem, heo
        1. region b:27-117 [43628] picpiclink
        2. region g:27-117 [43631] picpiclink
Enter search key:
MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk