Structural Classification of Proteins
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Family: Cdc48 domain 2-like

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Cdc48 domain 2-like [54584]
    beta-alpha-beta(3); 2 layers: alpha/beta
  4. Superfamily: Cdc48 domain 2-like [54585]
    link to SUPERFAMILY database - Superfamily
  5. Family: Cdc48 domain 2-like [54586]

Protein Domains:

  1. C-terminal domain of NSF-N, NSF-Nc [54587]
    NSF-N, the N-terminal 'functional' domain of the N-ethylmaleimide sensitive fusion protein, consists of two structural domains
    1. Hamster (Cricetulus griseus) [TaxId: 10029] [54588] (2)
      1. 1qcs picpicxref
        complexed with so4
        1. region a:86-201 [38461] picpiclink
      2. 1qdn picpicxref
        complexed with bme, so4
        1. region a:86-201 [38462] picpiclink
        2. region b:86-201 [38463] picpiclink
        3. region c:86-201 [38464] picpiclink
    2. Baker's yeast (Saccharomyces cerevisiae), sec18p [TaxId: 4932] [54589] (1)
      1. 1cr5 picpicxref
        1. region a:108-210 [38465] picpiclink
        2. region b:108-207 [38466] picpiclink
        3. region c:108-208 [38467] picpiclink
  2. C-terminal domain of VAT-N, VAT-Nc [54590]
    VAT-N is the N-terminal 'functional' domain of the VCP-like ATPase
    1. Archaeon Thermoplasma acidophilum [TaxId: 2303] [54591] (2)
      1. 1cz5 picpicxref
        1. region a:92-185 [38469] picpiclink
      2. 1cz4 picpicxref
        1. region a:92-185 [38468] picpiclink
  3. Membrane fusion atpase p97 domain 2, P97-Nc [64254]
    1. Mouse (Mus musculus) [TaxId: 10090] [64255] (5)
      1. 1e32 picpicxrefxref
        complexed with adp
        1. region a:107-200 [59185] picpiclink
      2. 2pjh picpicxref
        automatically matched to d1e32a3
        1. region b:107-200 [149564] picpiclink
      3. 1r7r picpicxrefxref
        complexed with adp
        1. region a:107-200 [97206] picpiclink
      4. 1oz4 picpicxrefxref
        complete low resolution structure
        complexed with adp, af3, zn
        1. region a:107-200 [93796] picpiclink
        2. region b:107-200 [93800] picpiclink
        3. region c:107-200 [93804] picpiclink
      5. 1s3s picpicxrefxrefxref
        complexed with adp
        1. region a:107-200 [98441] picpiclink
        2. region b:107-200 [98444] picpiclink
        3. region c:107-200 [98447] picpiclink
        4. region d:107-200 [98450] picpiclink
        5. region e:107-200 [98453] picpiclink
        6. region f:107-200 [98456] picpiclink
  4. Peroxisome biogenesis factor 1 (PEX-1), domain 2 [110874]
    1. Mouse (Mus musculus) [TaxId: 10090] [110875] (1)
      SQ Q5BL07 13-179
      1. 1wlf picpicxref
        complexed with so4
        1. region a:100-179 [109396] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk