Structural Classification of Proteins
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Superfamily: Cdc48 domain 2-like

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Cdc48 domain 2-like [54584]
    beta-alpha-beta(3); 2 layers: alpha/beta
  4. Superfamily: Cdc48 domain 2-like [54585]
    link to SUPERFAMILY database - Superfamily

Families:

  1. Cdc48 domain 2-like [54586] (5)
    1. C-terminal domain of NSF-N, NSF-Nc [54587]
      NSF-N, the N-terminal 'functional' domain of the N-ethylmaleimide sensitive fusion protein, consists of two structural domains
      1. Hamster (Cricetulus griseus) [TaxId: 10029] [54588] (2)
        1. 1qcs picpicxref
          complexed with so4
          1. region a:86-201 [38461] picpiclink
        2. 1qdn picpicxref
          complexed with bme, so4
          1. region a:86-201 [38462] picpiclink
          2. region b:86-201 [38463] picpiclink
          3. region c:86-201 [38464] picpiclink
      2. Baker's yeast (Saccharomyces cerevisiae), sec18p [TaxId: 4932] [54589] (1)
        1. 1cr5 picpicxref
          1. region a:108-210 [38465] picpiclink
          2. region b:108-207 [38466] picpiclink
          3. region c:108-208 [38467] picpiclink
    2. C-terminal domain of VAT-N, VAT-Nc [54590]
      VAT-N is the N-terminal 'functional' domain of the VCP-like ATPase
      1. Archaeon Thermoplasma acidophilum [TaxId: 2303] [54591] (2)
        1. 1cz5 picpicxref
          1. region a:92-185 [38469] picpiclink
        2. 1cz4 picpicxref
          1. region a:92-185 [38468] picpiclink
    3. Membrane fusion atpase p97 domain 2, P97-Nc [64254]
      1. Mouse (Mus musculus) [TaxId: 10090] [64255] (5)
        1. 1e32 picpicxrefxref
          complexed with adp
          1. region a:107-200 [59185] picpiclink
        2. 2pjh picpicxref
          automatically matched to d1e32a3
          1. region b:107-200 [149564] picpiclink
        3. 1r7r picpicxrefxref
          complexed with adp
          1. region a:107-200 [97206] picpiclink
        4. 1oz4 picpicxrefxref
          complete low resolution structure
          complexed with adp, af3, zn
          1. region a:107-200 [93796] picpiclink
          2. region b:107-200 [93800] picpiclink
          3. region c:107-200 [93804] picpiclink
        5. 1s3s picpicxrefxrefxref
          complexed with adp
          1. region a:107-200 [98441] picpiclink
          2. region b:107-200 [98444] picpiclink
          3. region c:107-200 [98447] picpiclink
          4. region d:107-200 [98450] picpiclink
          5. region e:107-200 [98453] picpiclink
          6. region f:107-200 [98456] picpiclink
    4. Peroxisome biogenesis factor 1 (PEX-1), domain 2 [110874]
      1. Mouse (Mus musculus) [TaxId: 10090] [110875] (1)
        SQ Q5BL07 13-179
        1. 1wlf picpicxref
          complexed with so4
          1. region a:100-179 [109396] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk