Structural Classification of Proteins
home mail help root up expand collapse

Fold: Cdc48 domain 2-like

beta-alpha-beta(3); 2 layers: alpha/beta

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Cdc48 domain 2-like [54584]
    beta-alpha-beta(3); 2 layers: alpha/beta

Superfamilies:

  1. Cdc48 domain 2-like [54585] (1)
    link to SUPERFAMILY database - Superfamily
    1. Cdc48 domain 2-like [54586] (5)
      1. C-terminal domain of NSF-N, NSF-Nc [54587]
        NSF-N, the N-terminal 'functional' domain of the N-ethylmaleimide sensitive fusion protein, consists of two structural domains
        1. Hamster (Cricetulus griseus) [TaxId: 10029] [54588] (2)
          1. 1qcs picpicxref
            complexed with so4
            1. region a:86-201 [38461] picpiclink
          2. 1qdn picpicxref
            complexed with bme, so4
            1. region a:86-201 [38462] picpiclink
            2. region b:86-201 [38463] picpiclink
            3. region c:86-201 [38464] picpiclink
        2. Baker's yeast (Saccharomyces cerevisiae), sec18p [TaxId: 4932] [54589] (1)
          1. 1cr5 picpicxref
            1. region a:108-210 [38465] picpiclink
            2. region b:108-207 [38466] picpiclink
            3. region c:108-208 [38467] picpiclink
      2. C-terminal domain of VAT-N, VAT-Nc [54590]
        VAT-N is the N-terminal 'functional' domain of the VCP-like ATPase
        1. Archaeon Thermoplasma acidophilum [TaxId: 2303] [54591] (2)
          1. 1cz5 picpicxref
            1. region a:92-185 [38469] picpiclink
          2. 1cz4 picpicxref
            1. region a:92-185 [38468] picpiclink
      3. Membrane fusion atpase p97 domain 2, P97-Nc [64254]
        1. Mouse (Mus musculus) [TaxId: 10090] [64255] (5)
          1. 1e32 picpicxrefxref
            complexed with adp
            1. region a:107-200 [59185] picpiclink
          2. 2pjh picpicxref
            automatically matched to d1e32a3
            1. region b:107-200 [149564] picpiclink
          3. 1r7r picpicxrefxref
            complexed with adp
            1. region a:107-200 [97206] picpiclink
          4. 1oz4 picpicxrefxref
            complete low resolution structure
            complexed with adp, af3, zn
            1. region a:107-200 [93796] picpiclink
            2. region b:107-200 [93800] picpiclink
            3. region c:107-200 [93804] picpiclink
          5. 1s3s picpicxrefxrefxref
            complexed with adp
            1. region a:107-200 [98441] picpiclink
            2. region b:107-200 [98444] picpiclink
            3. region c:107-200 [98447] picpiclink
            4. region d:107-200 [98450] picpiclink
            5. region e:107-200 [98453] picpiclink
            6. region f:107-200 [98456] picpiclink
      4. Peroxisome biogenesis factor 1 (PEX-1), domain 2 [110874]
        1. Mouse (Mus musculus) [TaxId: 10090] [110875] (1)
          SQ Q5BL07 13-179
          1. 1wlf picpicxref
            complexed with so4
            1. region a:100-179 [109396] picpiclink
Enter search key:
MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk