Structural Classification of Proteins

Family: Fluorescent proteins

Lineage:

Root: scop
Class: Alpha and beta proteins (a+b) [53931]
Mainly antiparallel beta sheets (segregated alpha and beta regions)
Fold: GFP-like [54510]
beta-sheet folds into a barrel (n=11, S=14) around the central helix
Superfamily: GFP-like [54511]
uperfamily
Family: Fluorescent proteins [54512]

Protein Domains:

Green fluorescent protein, GFP [54513]
1. Jellyfish (Aequorea victoria) [TaxId: 6100] [54514] (53)
  SQ P42212
  1. 1oxd
    "gold" class of GFP; cyan fluorescent protein
    complexed with nyc; mutant
    1. chain a [93687]
  2. 1oxe
    "gold" class of GFP; cyan fluorescent protein
    complexed with nyc; mutant
    1. chain a [93688]
  3. 1kyp
    Zn biosensor, apo form
    complexed with crg, mo6; mutant
    1. chain a [73280]
  4. 1q4e
    complexed with cro; mutant
    1. chain a [95788]
  5. 1kys
    Zn biosensor, Zn-bound form
    complexed with crg, zn, zn3; mutant
    1. chain a [73288]
  6. 1q4a
    complexed with cro; mutant
    1. chain a [95784]
  7. 1qyf
    complexed with cro, egl, mo5; mutant
    1. chain a [96588]
  8. 1kyr
    Zn biosensor, Cu-bound form
    complexed with crg, cu, mg; mutant
    1. chain a [73287]
  9. 1h6r
    a redox sensitive variant
    complexed with cl, pia; mutant
    1. chain a [65683]
    2. chain b [65684]
    3. chain c [65685]
  10. 1s6z
    complexed with cl, cr0; mutant
    1. chain a [98613]
  11. 1q4c
    complexed with cro; mutant
    1. chain a [95786]
  12. 1q4b
    complexed with cro; mutant
    1. chain a [95785]
  13. 1jbz
    a dual-wavelength emission variant
    complexed with cro, edo, mg; mutant
    1. chain a [77103]
  14. 1q73
    complexed with cro; mutant
    1. chain a [96018]
  15. 1q4d
    complexed with cro; mutant
    1. chain a [95787]
  16. 1oxf
    "gold" class of GFP; cyan fluorescent protein
    complexed with 4in, 5za
    1. chain a [93689]
  17. 1qyo
    mutant
    1. chain a [96601]
  18. 1rmo
    complexed with 32t, cro
    1. chain a [105016]
  19. 1qyq
    complexed with cr5; mutant
    1. chain a [96602]
  20. 1qy3
    mutant
    1. chain a [96570]
  21. 1hcj
    Photoproduct of the wild-type GFP
    complexed with csy; mutant
    1. chain a [65792]
    2. chain b [65793]
    3. chain c [65794]
    4. chain d [65795]
  22. 1huy
    citrine, an improved yellow-emission variant
    complexed with cro; mutant
    1. chain a [61280]
  23. 1rmm
    complexed with 32s, cro
    1. chain a [105015]
  24. 1ema
    complexed with cro; mutant
    1. chain a [38339]
  25. 1qxt
    mutant
    1. chain a [96562]
  26. 2emd
    complexed with csh; mutant
    1. chain a [38340]
  27. 1emg
    complexed with cro; mutant
    1. chain a [38346]
  28. 1gfl
    mutant
    1. chain a [38341]
    2. chain b [38342]
  29. 1jby
    a dual-wavelength emission variant
    complexed with cro; mutant
    1. chain a [77102]
  30. 1myw
    yellow-emission variant
    complexed with cr2; mutant
    1. chain a [79678]
  31. 1rrx
    complexed with mfc, yof
    1. chain a [105085]
  32. 1emb
    complexed with cro; mutant
    1. chain a [38344]
  33. 1emk
    complexed with ccy; mutant
    1. chain a [38343]
  34. 1bfp
    blue-emission variant
    complexed with iic; mutant
    1. chain a [38345]
  35. 1emc
    complexed with csy; mutant
    1. chain a [38352]
    2. chain b [38353]
    3. chain c [38354]
    4. chain d [38355]
  36. 1emf
    complexed with csh; mutant
    1. chain a [38349]
  37. 1emm
    complexed with csy; mutant
    1. chain a [38348]
  38. 2emn
    complexed with csh; mutant
    1. chain a [38351]
  39. 1kp5
    cyclic variant with linked natural termini
    complexed with csy, so4; mutant
    1. chain a [72842]
    2. chain b [72843]
  40. 1eml
    complexed with csy; mutant
    1. chain a [38350]
  41. 1jc1
    complexed with cro; mutant
    1. chain a [90888]
    2. chain b [90889]
    3. chain c [90890]
  42. 1eme
    complexed with csy; mutant
    1. chain a [38357]
  43. 1b9c
    complexed with cro; mutant
    1. chain a [38358]
    2. chain b [38359]
    3. chain c [38360]
    4. chain d [38361]
  44. 1yfp
    yellow-emission variant
    complexed with cro; mutant
    1. chain a [38362]
    2. chain b [38363]
  45. 1f0b
    complexed with cro; mutant
    1. chain a [38347]
  46. 1c4f
    complexed with cro; mutant
    1. chain a [38365]
  47. 1f09
    complexed with cro, iod; mutant
    1. chain a [38356]
  48. 2yfp
    yellow-emission variant
    complexed with cro; mutant
    1. chain a [38364]
  49. 1jc0
    complexed with cro; mutant
    1. chain a [90885]
    2. chain b [90886]
    3. chain c [90887]
  50. 1rm9
    complexed with 4f3, 4fw
    1. chain a [105012]
  51. 1cv7
    complexed with crf; mutant
    1. chain a [90428]
  52. 2emo
    complexed with csh; mutant
    1. chain a [38366]
  53. 1rmp
    complexed with 23s, cro
    1. chain a [105017]
2. Renilla reniformis [TaxId: 6136] [160126] (4)
  SQ Q963I9 7-226
  1. 2rh7
    complexed with cro
    1. region a:7-226 [152030]
  2. 2rh7
    automatically matched to 2RH7 A:7-226
    complexed with cro
    1. region b:7-226 [152031]
  3. 2rh7
    automatically matched to 2RH7 A:7-226
    complexed with cro
    1. region c:7-226 [152032]
  4. 2rh7
    automatically matched to 2RH7 A:7-226
    complexed with cro
    1. region d:7-226 [152033]
Red fluorescent protein (fp583 or dsred(clontech)) [54515]
1. Coral (Discosoma sp.) [TaxId: 86600] [54516] (2)
  1. 1ggx
    complexed with crq
    1. chain a [38367]
    2. chain b [38368]
    3. chain c [38369]
    4. chain d [38370]
  2. 1g7k
    complexed with crq; mutant
    1. chain a [38371]
    2. chain b [38372]
    3. chain c [38373]
    4. chain d [38374]
Red fluorescent protein fp61 [102854]
1. Sea anemone (Entacmaea quadricolor) [TaxId: 6118] [102855] (1)
  1. 1uis
    complexed with acy, ca, nrq
    1. chain a [99431]
    2. chain b [99432]
Pocilloporin pigment Rtms5 [89866]
1. Coral (Montipora efflorescens) [TaxId: 105610] [89867] (2)
  1. 1mou
    complexed with crq, iod
    1. chain a [85037]
  2. 1mov
    complexed with crq, iod; mutant
    1. chain a [85038]
GFP-like non-fluorescent chromoprotein FP595 [117863]
1. Anemonia sulcata [TaxId: 6108] [117864] (1)
  SQ Q9GZ28 # 95% sequence identity
  1. 1xqm
    complexed with acy, ch6
    1. chain a [115851]